TCDB is operated by the Saier Lab Bioinformatics Group
SSEARCH: Protein versus protein
Description: Perform a sequence similarity search against TC-DB with a query protein. SSEARCH performs a rigorous Smith-Waterman local alignment between a protein and a protein database. SSEARCH employs an exhaustive algorithm whereas BLAST and FASTA use a heuristic methodology. As a consequence SSEARCH is slower in comparison to either BLAST or FASTA, however what you lose in speed is regained in sensitivity.
Matrix: Gap Open Penalty: Gap Extension Penalty: Number of Shuffles:

Enter protein UniProt ID or FASTA sequence:

Enter protein UniProt ID or FASTA sequence: