TCDB is operated by the Saier Lab Bioinformatics Group
« See all members of the family


3.A.11.1.5
Putative competence system ComE1, ComE3, ComF1, ComFC plus pilin and additional coompetence-related proteins.  It is not sure that all of these proteins comprise a single system.  Their encoding genes are scattered thoughout the genome with only a few gene clusters.

Accession Number:AKM80378.1
Protein Name:AKM80378.1 Type II secretion system protein [Candidatus Saccharibacteria bacterium GW2011_GWC2_44_17]
Length:410
Molecular Weight:
Species:Candidatus Saccharibacteria bacterium GW2011_GWC2_44_17 [1619070]
Number of TMSs:4
Substrate

Cross database links:

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
Window Size: Angle:  
Window Size: Angle:  
FASTA formatted sequence
1:	MPKFKYVATS NNDSSKTVTG TLDAPDEAAV VAALKKQRIQ PLRVTIDGSR SSSFGKLFGG 
61:	GKVKSDDLVI FTRQLSAMVG AGVPLLRALN SLEQHAESPA LKSILVAVIK DVEGGAPLAD 
121:	ALEKHPNTFS DVYINMVRAG EAAGILDDIL KRLALQQEKN ASIRKKVKSA MAYPMVLMVI 
181:	TVIAFFGLML FVIPQIGKIL LDLGGPDAEL PLLTKIMLGI SAFSLQWWYI LIPAIVGGVF 
241:	LVLRYIKTPI GKRHFHRLVL KVPAVNTIIK KVVIARFART FSSLNGAGVS ILETLTVTSR 
301:	ALGNVIYEDA LLEAIEKVKN GQQLSQVLEQ DDLFPAIVPQ MLAVGEETGQ TDVVLLKVAD 
361:	FFEEEVDTSI NSLSSIIEPV MIVIMGSAVG LIAASVMGPI ASLSQNIKG