TCDB is operated by the Saier Lab Bioinformatics Group
« See all members of the family


3.A.1.147.6
Putative two component ABC exporter

Accession Number:C9XJW9
Protein Name:Putative ABC transporter, permease protein
Length:531
Molecular Weight:60103.00
Species:Clostridium difficile (strain CD196) [645462]
Number of TMSs:12
Substrate Unknown

Cross database links:

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
Window Size: Angle:  
Window Size: Angle:  
FASTA formatted sequence
1:	MSNLSILIKT NIINEFKLNA LKKADSREKQ KIMGMILSVV IITGLLIFYV TSISLSLVDI 
61:	LKQINQMEML LIFGFGLSTL TTIVTSLYKT SSYLFQAKDL DLLTSLPIKE STVLASKILM 
121:	LVGANYLFSS ICMIIPAVVY FFNSDVSITY FPYLILLFLA LPLLPIVASS IIFMFIGQIS 
181:	SRIKYKNLIL IIGSIILMLL YTLLMTRLNS MSVEMLKNSV SISETIRKIY PPIYYFVDAL 
241:	KTGSVVSFLA FIAISIIPFF MFVTLFAKKF KDINAKMSEG YKSKTYKFKS QKTSRPSKAL 
301:	LKKEFKRYTS SFIYFLNSSA GLLFLIIGTI LILLFGADKV GELLKLNIDF NFIKIQLLGV 
361:	FFFIIVMNCT TYCSISLEGK NLWILKSSPI DEREIFWSKI LMNFLLNAPL SILCLILVSI 
421:	RLGFEIQFII VSICLIASFS MFVALMGLLS NLLYPNLDWK NEMAVVKRSA SMIITMLVSL 
481:	AYVIILGGIY VLLGISFLNI YIILASILTF ILDFMIWRII STKGVRIFKN L