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2.A.6.3.8
Efflux pump for antifungal and antibacterial syringopeptin and syringmycin lipodepsipeptides (see 1.D.35) as well as acriflavin, erythromycin and tetracycline, PseABC (Kang and Gross 2005).

Accession Number:L8NE56
Protein Name:RND-type efflux system, outer membrane protein PseA
Length:476
Molecular Weight:51123.00
Species:Pseudomonas syringae pv. syringae B64 [1260626]
Number of TMSs:1
Substrate Syringopeptin, Syringmycin lipodepsipeptides, acriflavin, erythromycin, tetracycline

Cross database links:

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
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FASTA formatted sequence
1:	MSIGKPAGYF LVSTLLVSLL SGCTLGPDYQ LPAVAVASQW HAPLPHGASM VGLQDWWQQF 
61:	NDPALATLLR LAQADSPSLD QALARIAQAR ATLDGSVADR LPQVSGGVSK SRAGINQSGL 
121:	HKSGTTSGAT LDASWELDLF GKLRRTDEAS RNLLEARVND WHDARVSLAA EVGDDFVQYR 
181:	GCQMLVNAYR DQAQSQEQTA RLTRVSFQAG FTAAADSSLS DASAAASNAT LIKQQSECDV 
241:	LLKSLVALTG SDEEQVREVL GHNPARLPQP ALLDVREIPA DLVRQRPDLA SSERELAAAN 
301:	AKIGAAQADR LPKLSLVGSF QVGTTTGVFS RVWSLGPQLT VPLFDAGKRR AAVDSAQADY 
361:	DAALATYRQT LRTSVMEVEQ SLVRLDAARR GQASTQQAAD GYEASFEATD RNWQAGNASL 
421:	LDREVARRSA LSAQIELITV QQNQVRYWIA LYKALGGGWQ DSREGLARQT PKRGGA