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2.A.6.3.8
Efflux pump for antifungal and antibacterial syringopeptin and syringmycin lipodepsipeptides (see 1.D.35) as well as acriflavin, erythromycin and tetracycline, PseABC (Kang and Gross 2005).

Accession Number:L8NFZ8
Protein Name:RND-type efflux system, inner membrane pump protein PseC
Length:1014
Molecular Weight:109291.00
Species:Pseudomonas syringae pv. syringae B64 [1260626]
Number of TMSs:11
Substrate Syringopeptin, Syringmycin lipodepsipeptides, acriflavin, erythromycin, tetracycline

Cross database links:

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
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FASTA formatted sequence
1:	MNISALSIRY PVPAVMLFLL LTLFGFLGLE RLGIQDFPDT DLPAVVISAS LEGAAPEQLE 
61:	TEVARKLEDK LTSLRLLKHV TTKISEGSVL INVIFEIDKD GNEALNEVRN AVDSAAAELP 
121:	ANLDTPSVTR LTTNTTALLT YVVDAPRMDE EALSWFVDNE LSKQLLTVRG VAKISRVGGV 
181:	DREVQVDLDP TLMAGLGLSV TDIANRLRAM QKDNSGGQGD LGSGQQALRV LGGIDDPAAL 
241:	GAIRIPVSDG RMLAVQQLAT VRDTHAERNT LAYRDGKPVI GFQVIRSLGF SDVGVTKDLR 
301:	QAVSEFARQH PDVHIEEASN AVEPVMENYR GSMALLYEGM LLAVLVVWWF LRDWRATIIV 
361:	ATALPLSIIP TFGVMYFAGF SLNTVSLLAL ALVIGILVDD AIVEVENIAR HLRMGKTPRQ 
421:	AAIEASDEIG LAVLATTVTL VAVFLPTAFM GGISGKLFRQ FGVTASAALM FSLLVARLLT 
481:	PMMAAYLLKA RPHGEHDSGL MRRYLGWIHT SLSRRKTTMA IVGALFIGSL ALIPLLPTSF 
541:	LPAQDIASST VSLELPPGTS LAQTGEIALQ AEKRLRAIPE VAHVFIAAGS GDAGGAGDRD 
601:	AKLTVDLLPR DQRTLKQSQV EASMRESLRS LPGVRVTVGG DGSGERLDIV LASDDGDLLE 
661:	RTAAALEPQL RQIKGIGNVT SSAAVQRPEI QMRPDVFRAA EQGISSQDIA DTLRMATYGE 
721:	YSSSLGKINL SQRQVNVRVR MQPQVRTDLQ SLAQLRIKGR DGQIALASLG ELSMGSGPAE 
781:	IDRIDRLRNI TLSIELNGSN LGEVMEQARQ LPAMQNLPAQ VKLVEQGELQ LMSELFGNFS 
841:	LAMAVGVFCI YAVLVLLFHD FMQPLTILSA LPLSLGGALL ALLIGGMSFS MASVIGLLML 
901:	MGIVTKNSIL LVEYAIMARR APTVSRYEAL IDACHKRARP ILMTTIAMGA GMLPTALGWG 
961:	GESGFRQPMA VVVIGGLLAS TVLSLLVVPV IFTYVDDGHE TFKRWFSRPR QTHD