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1.A.30.1.2
The flagellar motor (smf-dependent) (PomAB; MotXY) (Okabe et al., 2005)

Accession Number:O06873
Protein Name:PomA
Length:253
Molecular Weight:27258.00
Species:Vibrio alginolyticus [663]
Number of TMSs:4
Location1 / Topology2 / Orientation3: Cell inner membrane1 / Multi-pass membrane protein2
Substrate Na+

Cross database links:

Pfam: PF01618   

Gene Ontology

GO:0016021 C:integral to membrane
GO:0005886 C:plasma membrane
GO:0003774 F:motor activity
GO:0008565 F:protein transporter activity
GO:0006935 P:chemotaxis
GO:0001539 P:ciliary or flagellar motility
GO:0015992 P:proton transport

References (1)

[1] “Putative channel components for the fast-rotating sodium-driven flagellar motor of a marine bacterium.”  Asai Y.et.al.   9260952

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
Window Size: Angle:  
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FASTA formatted sequence
1:	MDLATLLGLI GGFAFVIMAM VLGGSIGMFV DVTSILIVVG GSIFVVLMKF TMGQFFGATK 
61:	IAGKAFMFKA DEPEDLIAKI VEMADAARKG GFLALEEMEI NNTFMQKGID LLVDGHDADV 
121:	VRAALKKDIA LTDERHTQGT GVFRAFGDVA PAMGMIGTLV GLVAMLSNMD DPKAIGPAMA 
181:	VALLTTLYGA ILSNMVFFPI ADKLSLRRDQ ETLNRRLIMD GVLAIQDGQN PRVIDSYLKN 
241:	YLNEGKRALE IDE