TCDB is operated by the Saier Lab Bioinformatics Group
« See all members of the family


1.A.30.1.2
The flagellar motor (smf-dependent) (PomAB; MotXY) (Okabe et al., 2005)

Accession Number:O06874
Protein Name:PomB
Length:315
Molecular Weight:35463.00
Species:Vibrio alginolyticus [663]
Number of TMSs:1
Location1 / Topology2 / Orientation3: Cell inner membrane1 / Multi-pass membrane protein2
Substrate Na+

Cross database links:

Pfam: PF00691   

Gene Ontology

GO:0009279 C:cell outer membrane

References (1)

[1] “Putative channel components for the fast-rotating sodium-driven flagellar motor of a marine bacterium.”  Asai Y.et.al.   9260952
Structure:
3WPW   3WPX     

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
Window Size: Angle:  
Window Size: Angle:  
FASTA formatted sequence
1:	MDDEDNKCDC PPPGLPLWMG TFADLMSLLM CFFVLLLSFS EMDVLKFKQI AGSMKFAFGV 
61:	QNQLEVKDIP KGTSIIAQEF RPGRPEPTPI DVIMQQTMDI TQQTLEFHEG ESDRAGGTKR 
121:	DEGKLTGGQS PATSTQNNES AEADMQQQQS KEMSQEMETL MESIKKALER EIEQGAIEVE 
181:	NLGQQIVIRM REKGAFPEGS AFLQPKFRPL VRQIAELVKD VPGIVRVSGH TDNRPLDSEL 
241:	YRSNWDLSSQ RAVSVAQEME KVRGFSHQRL RVRGMADTEP LLPNDSDDNR ALNRRVEISI 
301:	MQGEPLYSEE VPVIQ