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3.D.1.6.4
The green algal H+ translocating NADH dehydrogenase (NDH) complex (42 subunits; 33 included here) (Cardol et al., 2004)

Accession Number:P20113
Protein Name:ND4 (48.7) (NuoM)
Length:443
Molecular Weight:48737.00
Species:Chlamydomonas reinhardtii [3055]
Number of TMSs:15
Location1 / Topology2 / Orientation3: Mitochondrion membrane1 / Multi-pass membrane protein2
Substrate H+

Cross database links:

RefSeq: NP_042565.1   
Entrez Gene ID: 801494   
Pfam: PF00361   
KEGG: cre:ChrepMp02   

Gene Ontology

GO:0016021 C:integral to membrane
GO:0031966 C:mitochondrial membrane
GO:0070469 C:respiratory chain
GO:0008137 F:NADH dehydrogenase (ubiquinone) activity
GO:0042773 P:ATP synthesis coupled electron transport
GO:0006810 P:transport

References (4)

[1] “Short dispersed repeats localized in spacer regions of Chlamydomonas reinhardtii mitochondrial DNA.”  Boer P.H.et.al.   1831072
[2] “Nucleotide sequence of cloned nad4 (urf4) gene from Chlamydomonas reinhardtii mitochondrial DNA.”  Ma D.-P.et.al.   2628173
[3] “Mitochondrial DNA of Chlamydomonas reinhardtii: the ND4 gene encoding a subunit of NADH dehydrogenase.”  Pratje E.et.al.   2791036
[4] “The URF 5 gene of Chlamydomonas reinhardtii mitochondria: DNA sequence and mode of transcription.”  Boer P.H.et.al.   3007117

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
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FASTA formatted sequence
1:	MFISVLLILF ALCVTLIPEA HYHMVRVWSF VATIIPMWVV TWMWWNFDAS GHGLQMLVIL 
61:	GRSHLAFGID GVALSLMLLT TVLFPICMML LRTVAGFMTF ILLEVLVLSA LCVLDLLGFY 
121:	ILFEASLILL FLLIGRAPYG SLEAAYKIVL YTMAGSLVLL PTLFMIYSEC GTTNVLYMTC 
181:	AYNHQTVLGW GLLAVLAVKI PLMPVHLWLP EAHVAAPTAG SVLLAGVLLK LGGIGFLRFM 
241:	LPVVPEFCVS VFPLVSTLCL VSFLFSTLST LRQIDLKKIV AYSSIAHMSM VTLAIFSQSE 
301:	FSAYSSSFLM IAHGLISPAL FLIVGILYDR AHTKFILYFS GLGASMPIGS TLFFLFTLGN 
361:	LAFPLFPNFI AEVLCMVSIF AVHELLAYVF CVCQVLGAAY GFWAFNRVVH GLPRGPADVT 
421:	RTEFHTVLPL LIGAVWLGIK PMA