TCDB is operated by the Saier Lab Bioinformatics Group
« See all members of the family


3.D.1.4.4
Energy conserving probable carbon monoxide-inducible hydrogenase, CooMKLXUH (Martins et al. 2016).

Accession Number:Q729R3
Protein Name:Hydrogenase, CooM subunit, putative
Length:1253
Molecular Weight:131082.00
Species:Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / DSM 644 / NCIMB 8303) [882]
Number of TMSs:35
Location1 / Topology2 / Orientation3: Membrane1 / Multi-pass membrane protein2
Substrate H+

Cross database links:

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
Window Size: Angle:  
Window Size: Angle:  
FASTA formatted sequence
1:	MQPAPTLFDL PFMVQAGIVL LFWGTLAAIA ARRRLDALIG YGAVADAGIA LIGFGLGSAT 
61:	ATTGGILFAA FQCLARLLAY GALRPLMSKA GSAEADALRG IREAMPASAV LYGFGMFAAL 
121:	GISPFLVPEG RMLVTAAAVQ SGGLLLPLLM ALSAAIMAWL TVVATQTVCL EHGPWEASGI 
181:	TPERLPLHLA PVALAVAGCG IGGHALMVGA AAFLGHAPES LPALADGWHP AALVPYAGAF 
241:	CVWAAGGVAR PFRSILAVVL AAAALALAWH GAGLDPLARL FAVITGGVCL AVTAYSVGYI 
301:	THARHSSGYY FFLMIMTGSL MGLVSTRSFG SFYGFWELMT WSSYFLVVHE GTPRAFRAGV 
361:	KYFVMCAAGA MFMLPGLLML TNGGSADFDA VTTAVRQLDP MLLKAALLLT LAGFAVKAGF 
421:	VPVHGWLPDA HPVAPSSISG PLSGLLTKTG IYGIVRVLFA ICGMTVLLQT GEGIAGISWM 
481:	GAAVTTLGVL TMAYGEVMAL RQDDIKRLLA YSTMGQIGEI ATIIGLGTWL STTGALAHVL 
541:	NHAIMKNLLF LCAGALVMRA GRKLEDLAGM GRMMPWTAGC MMVGVLSIMG MPPFAGFASK 
601:	YLMLQGAVQA GHPELAAALL LASLAGAVYY MRIIRVLVFM PRKGHPVQEA PWAMRLPMLV 
661:	LAGLCVFLGI APQYGLALVT PVADMLVAAG NLAPQTLPSL TVSWPPYVVL TMLGAALPAL 
721:	LRHDRKLAGW ATALVLLVAA VVAAFTGRDL DMLSYGFVLT VAVIGCLNMV YAVGYMEHSH 
781:	TQWRFYTFFL FMVGGLMGVA ASRDLYSFFT FWEIMSSWSL YCVIVHEEFP EALREGFKYF 
841:	FFNVLGAAFM FLGVVLLTAG AGSPAFDAVH AALPSMPVGL SATAVGLMVL GLVMKAAQLP 
901:	FRIDVQMHPA TAPTPVSGYI SSVLLKSALF GLAKLLLALG GGAVLVQAAG FTDGIGLMQV 
961:	VAWVGGITIV MAALLAVLQS DLKLVLIYST VSQLGYMVLA FALGTPLGMA GGLLHLANHV 
1021:	LFKDLLFLVA GALILQTHKH SLDQLGGIGR KMPVTLGVFA IGALSVVGVP PTNGFTSKWI 
1081:	IYHALMQQGE VMLAILSLVG SVLTLAYFAK YLHAAFLGQP SPDIDHVQEA PRVMLVPMLV 
1141:	LAAGCVVTGF FPGLLLAPIA TMLTALGLTA PEVAPWGLAS GAGAWNATAV AVLATVAAAF 
1201:	GWGMLRLLTR DSRVTTVHTC GVDLGRDVAR MNSGSIYGAP VALLRGMTAS KER