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1.A.8.8.20
Channel protein

Accession Number:Q55998
Protein Name:SMPX aka SEC0003
Length:269
Molecular Weight:30098.00
Species:Synechococcus sp [1131]
Number of TMSs:6
Location1 / Topology2 / Orientation3: Cell inner membrane1 / Multi-pass membrane protein2
Substrate Unknown

Cross database links:

Pfam: PF00230   

Gene Ontology

GO:0016021 C:integral to membrane
GO:0005215 F:transporter activity
GO:0055085 P:transmembrane transport

References (1)

[1] “A Synechococcus gene encoding a putative pore-forming intrinsic membrane protein.”  Kashiwagi S.et.al.   7632713

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
Window Size: Angle:  
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FASTA formatted sequence
1:	MKMLRALKHH WPEYLIEAWG LGLFMVAAGV VGTLVFYPQS PAYQAIADPF LQRVVMGLGM 
61:	GLTAMIIMYS PWGKRSGAHI NPAVTLTFYR LKKIAAWDAF FYVVFQFIGG LLGVVLVAFL 
121:	LQTPFTQAPV NYVVTVPGKQ GAIVACIAEY FIAVLMMSMV LFTSNQPKLE RFTPFFAGCL 
181:	IVSYVIFESP LSGFGMNPAR TVASALPSGI WTAIWLYFLA PIAGMLTAAE LYLRMIGPRK 
241:	IFCAKLYHDP LYRCIHCGHL IHWHRPHLR