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1.B.1.1.7
ComP porin.  A virulence factor essential for cytotoxicity and apoptosis by this enteric pathogen (Tsugawa et al., 2008)

Accession Number:A0JCJ5
Protein Name:ComP
Length:356
Molecular Weight:38598.00
Species:Plesiomonas shigelloides [703]
Number of TMSs:1
Location1 / Topology2 / Orientation3: Cell membrane1 / Peripheral membrane protein2
Substrate small molecules

Cross database links:

Pfam: PF00267   

Gene Ontology

GO:0016020 C:membrane
GO:0005215 F:transporter activity
GO:0006810 P:transport

References (1)

[1] “Primary structure and function of a cytotoxic outer-membrane protein (ComP) of Plesiomonas shigelloides.”  Tsugawa H.et.al.   18318838

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
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FASTA formatted sequence
1:	MKKTILALAV PALLAAGVTN AATVYNNDGT KIDLKGSIRL LAEDGARRDA DLSDDSSRIG 
61:	LGINHDLGNG LSGLGYIEMG YDTQMPETNS KSTIKNRLAY AGLSLDGVGT LTAGRITAPF 
121:	DDVAVSDYTW TYGGVMDFGK MQNNADRGPF GQKNTFLART SNSVKVESAE FNGFKAAGSY 
181:	TMQTGDNTSD VKNAYTLAAF YTSDFGLTFN AGYGHGKSVG QEASLNTAAI NAVDADIWGI 
241:	GAQYQIADFS IGLDYGQAKL DWNTAGESNS KADLLGVGVK YQIIEQTKVY AGYYGRDYSD 
301:	YKNWDRHDLY VVGTDYAFSK NVVTFLEYAH DDYKYVKPTT DVKNDDRIGL GFRVYF