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1.B.1.1.8
Trimeric 16 TMS non-specific porin, Omp-EA (Elazer et al., 2007)

Accession Number:A0RZH5
Protein Name:Outer membrane protein 39 aka Omp39
Length:383
Molecular Weight:41308.00
Species:Erwinia amylovora (Fire blight bacteria) [552]
Number of TMSs:1
Location1 / Topology2 / Orientation3: Membrane1 / Multi-pass membrane protein2
Substrate Solutes

Cross database links:

Pfam: PF00267   

Gene Ontology

GO:0016020 C:membrane
GO:0005215 F:transporter activity
GO:0006810 P:transport

References (1)

[1] “Porin isolated from the outer membrane of Erwinia amylovora and its encoding gene.”  Elazar M.et.al.   17211539

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
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FASTA formatted sequence
1:	MKRNILAVLI PALLAAGAAN AAEIYNKDGN KLDLYGKVKA MRYLSDADSN ASNNADKSYT 
61:	RIGFKGQTLI NDQLTGYGQW EYNFSLSNSE SSSDAQSGNK TRLGFAGLKL KDYGSVDYGR 
121:	NYGVIYDVEA FTDMMPEFGA TGYTRTDTYM LTRGNSMLTW RNSDFFGLVD GLKIALQYQG 
181:	KNEGSGTRAT NVSNGDGYGA SLSYKIVEGL TINGAMSSSN RLNANSASST TSQKMAAYGS 
241:	GGRAEAWATG LKYDANGVYL AGTYAETRNT NPFSGASYTF AGNSTATAVS GYANKVQNTE 
301:	LVAQYQFDSG LRPSLAYVQT KAKDIENGIG DADLSKFVDV AATYYFNKNM SAFVDYKVNL 
361:	LSDSNKLHLN TDDIVAVGLV YQF