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1.B.1.4.1
Omp porin

Accession Number:Q04064
Protein Name:OMP
Length:385
Molecular Weight:41046.00
Species:Bordetella pertussis [520]
Number of TMSs:1
Location1 / Topology2 / Orientation3: Cell outer membrane1 / Multi-pass membrane protein2
Substrate small molecules

Cross database links:

HEGENOM: HBG678429
RefSeq: NP_879650.1   
Entrez Gene ID: 2664642   
Pfam: PF00267   
BioCyc: BPER257313:BP0840-MONOMER   
KEGG: bpe:BP0840   

Gene Ontology

GO:0009279 C:cell outer membrane
GO:0005886 C:plasma membrane
GO:0046930 C:pore complex
GO:0005215 F:transporter activity
GO:0006811 P:ion transport

References (2)

[1] “Cloning and sequencing of the structural gene for the porin protein of Bordetella pertussis.”  Li Z.M.et.al.   1658537
[2] “Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica.”  Parkhill J.et.al.   12910271

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
Window Size: Angle:  
Window Size: Angle:  
FASTA formatted sequence
1:	MKKTLLAAAL LAGFAGAAQA ETSVTLYGII DTGIGYNDVD FKVKGANADD SDFKYNHSRF 
61:	GMINGVQNGS RWGLRGTEDL GDGLQAVFQL ESGFNSGNGN SAQDGRLFGR QATIGLQSES 
121:	WGRLDFGRQT NIASKYFGSI DPFGAGFGQA NIGMGMSAMN TVRYDNMVMY QTPSYSGFQF 
181:	GIGYSFSAND KDADAVNRVG FATADNVRAI TTGLRYVNGP LNVALSYDQL NASNNQAQGE 
241:	VDATPRSYGL GGSYDFEVVK LALAYARTTD GWFGGQGYPV AVTLPSGDKF GGFGVNTFAD 
301:	GFKANSYMVG LSAPIGGASN VFGSWQMVDP KLTGGDEKMN VFSLGYTYDL SKRTNLYAYG 
361:	SYAKNFAFLE DAKSTAVGVG IRHRF