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1.B.1.5.1
Oma1 porin (Class 1) (Tanabe et al., 2010)

Accession Number:P05430
Protein Name:OMA aka Oma1 aka PORA
Length:326
Molecular Weight:35684.00
Species:Neisseria gonorrhoeae [485]
Number of TMSs:1
Location1 / Topology2 / Orientation3: Cell outer membrane1 / Multi-pass membrane protein2
Substrate small molecules

Cross database links:

Pfam: PF00267   

Gene Ontology

GO:0009279 C:cell outer membrane
GO:0005886 C:plasma membrane
GO:0046930 C:pore complex
GO:0005215 F:transporter activity
GO:0006811 P:ion transport

References (1)

[1] “Molecular cloning and characterization of the structural gene for protein I, the major outer membrane protein of Neisseria gonorrhoeae.”  Carbonetti N.H.et.al.   3122212

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
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FASTA formatted sequence
1:	MKKSLIALTL AALPVAAMAD VTLYGTIKAG VETSRSVAHH GAQADRVKTA TEIADLGSKI 
61:	GFKGQEDLGN GLKAIWQLEQ KAYVSGTDTG WGNRQSFIGL KGGFGKVRVG RLNSVLKDTG 
121:	GFNPWEGKSY YLGLSNIAQP EERHVSVRYD SPEFAGFRAV QYVPNDNSGK NHSESYHAGF 
181:	NYKNSGFFVQ YAGFYKRHSY TTEKHQVHRL VGGYDHDALY ASVAVQQQDA KLTWRNDNSH 
241:	NSQTEVAATA AYRFGNVTPR VSYAHGFKGS VYDADNDNTY DQVVVGAEYD FSKRTSALVS 
301:	AGWLQRGKGT EKFVATVGGV GLRHKF