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1.B.1.8.3
Porin-like protein H (37 kDa outer membrane protein)

Accession Number:P29739
Protein Name:Porin-like protein H
Length:326
Molecular Weight:34942.00
Species:Photobacterium profundum [74109]
Number of TMSs:1
Location1 / Topology2 / Orientation3: Cell outer membrane1 / Multi-pass membrane protein2
Substrate small molecules

Cross database links:

eggNOG: COG3203
Entrez Gene ID: 3122534   
KEGG: ppr:PBPRA1012   

Gene Ontology

GO:0009279 C:cell outer membrane
GO:0005886 C:plasma membrane
GO:0046930 C:pore complex
GO:0015288 F:porin activity
GO:0006811 P:ion transport

References (3)

[1] “Sequence of the ompH gene from the deep-sea bacterium Photobacterium SS9.”  Bartlett D.H.et.al.   8396546
[2] “Life at depth: Photobacterium profundum genome sequence and expression analysis.”  Vezzi A.et.al.   15746425
[3] “Isolation of a gene regulated by hydrostatic pressure in a deep-sea bacterium.”  Bartlett D.H.et.al.   2479840

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
Window Size: Angle:  
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FASTA formatted sequence
1:	MKKTLVALAI LTAAGSANAG INLYDADGVK TDLSGAAEVQ YRQTFKEDSD AELRMDDGDL 
61:	AVNTTVAISD SLNAVAAVAF EFEDGKVTND ELWVGVAGDF GTLTAGRQYM LADDAGVGKD 
121:	YELGGDGIDF VQANGDQVVK YVFDNGQFYG GVGALITETN PDNNADEASV YEGRLGARFG 
181:	DFDVRAYLYS GEDVNTDNFD VFGDDKVNVD IDGYQIEAEY IVNAFAFAAS FGQVDYELAS 
241:	DSSQKIEADT AALAGSYTMN KTTFAVGYTY WSPEAKGTVK KMEEANVFYA NVTQQLHSNV 
301:	KVYGEIGSSD TDNSEFGYVA GMEVTF