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1.B.11.3.5
Type γ1 fimbrial usher, YcbS

Accession Number:Q8CVM4
Protein Name:Hypothetical outer membrane usher protein ycbS
Length:864
Molecular Weight:95723.00
Species:Escherichia coli O6 [217992]
Number of TMSs:1
Location1 / Topology2 / Orientation3: Cell outer membrane1 / Multi-pass membrane protein2
Substrate Fimbrial subunits

Cross database links:

HEGENOM: HBG511492
RefSeq: NP_756076.1   
Entrez Gene ID: 1036923   
Pfam: PF00577   
KEGG: ecc:c4212   

Gene Ontology

GO:0016020 C:membrane
GO:0005215 F:transporter activity
GO:0006810 P:transport

References (1)

[1] “Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli.”  Welch R.A.et.al.   12471157

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
Window Size: Angle:  
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FASTA formatted sequence
1:	MNLKLKRCEY WMAAQKQMKR VVPLLLVIMP ACSIAGMRFN PAFLSGDTEA VADLSRFEKG 
61:	MTYLPGSYEV EVWVNDSPLL SRTVTFKADD ENQLIPCLSL ADLLSLGINK NALPEQALAS 
121:	SENSCLDLRI WFPDVHYMPE LDAQRLKLTF PQAIIKRDAR GYIPPEQWDN GITAFLLNYD 
181:	FSGNNDRGDY SSNNYYLNLR AGINIGAWRF RDYSTWSRGS NSAGKLEHIS STLQRVIIPF 
241:	RSELTLGDTW SSSDVFDSVS IRGIKLESDE NMLPDSQSGF APTVRGIAKS RAQVTIKQNG 
301:	YVIYQTYMPP GPFEISDLNP TSSAGDLEVT IKESDNSETV YTVPYAAVPI LQREGHLKYS 
361:	TTVGQYRSNS YNQKSPYVFQ GELIWGLPWD ITAYGGAQFS EDYRALALGL GLNLGVFGAT 
421:	SFDVTQANSS LVDGSKHQGQ SYRFLYSKSL VQTGTAFHII GYRYSTQGFY TLSDTTYQQM 
481:	SGTVVDPKTL DDKDYVYNWN DFYNLRYSKR GKFQASVSQP FGNYGSMYLS ASQQTYWNTD 
541:	KKDSLYQVGY NTSIKGIYLN VAWNYSKSPG TNADKIVSLN VSLPISNWLS STNDGRSSSN 
601:	AMTATYGYSQ DNHGQVNQYT GVSGSLLEQH NLSYNIQHGF ANQDNSSSGS VGVNYRGAYG 
661:	SLNSAYSYDN EGNQQINYGI SGALVVHENG LTLSQPLGET NVLIKAPGAN NVDVQRGTGI 
721:	STDWRGYAVV PYATEYRRNN ISLDPMSMNM HTELDITSTE VIPGKGALVR AEFAAHIGIR 
781:	GLFTVRYRNK SVPFGATASA QIKNSSQITG IVGDNGQLYL SGLPLEGVIN IQWGDGVQQK 
841:	CQANYKLPET ELDNPVSYAT LECR