TCDB is operated by the Saier Lab Bioinformatics Group
« See all members of the family


1.B.11.5.1
Type β fimbrial usher, YhcD

Accession Number:P45420
Protein Name:Uncharacterized outer membrane usher protein yhcD
Length:793
Molecular Weight:86289.00
Species:Escherichia coli (strain K12) [83333]
Location1 / Topology2 / Orientation3: Cell outer membrane1 / Multi-pass membrane protein2
Substrate Fimbrial subunits

Cross database links:

Genevestigator: P45420
EchoBASE: EB2661
EcoGene: EG12810
eggNOG: COG3188
HEGENOM: HBG416657
DIP: DIP-12277N
RefSeq: AP_003759.1    NP_417683.1   
Entrez Gene ID: 947738   
Pfam: PF00577   
BioCyc: EcoCyc:G7670-MONOMER    ECOL168927:B3216-MONOMER   
KEGG: ecj:JW3183    eco:b3216   

Gene Ontology

GO:0009279 C:cell outer membrane
GO:0016021 C:integral to membrane
GO:0005886 C:plasma membrane
GO:0005215 F:transporter activity
GO:0006810 P:transport

References (2)

[1] “The complete genome sequence of Escherichia coli K-12.”  Blattner F.R.et.al.   9278503
[2] “Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110.”  Hayashi K.et.al.   16738553

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
Window Size: Angle:  
Window Size: Angle:  
FASTA formatted sequence
1:	MLKKTLLAYT IGFAFSPPAN ADGIEIAAVD FDRETLKSLG VDPNISHYFS RSARFLPGEY 
61:	SLIVSVNGEK KGNIATRFDE NGDICLDQAF LQQAGLKIPS EEKNGCYDYI LSYPGTTITP 
121:	LPNQEALDII VSPQAIIPIG LDLTNAATGG TAALLNYSLM SSRAEFSNGS SDYSQAALEG 
181:	GININDWMLR SHQFLTQTNG TFSNQNSSTY LQRTFTDLKT LMRAGEVNLN NSVLEGASIY 
241:	GIEIAPDNAL QTSGSGVQVT GIANTSQARV EIRQQGVLIH SILVPAGAFT IPDVPVRNGN 
301:	SDLNVTVVET DGSSHNYIVP STLFNQHVES FQGYRFAIGR VDDDYDESPW VISASSGWNL 
361:	TRWSAMNGGV IVAENYQAAS IRSSLVPLPD LTVSSQISTS QDTKDSLQGQ KYRLDANYNL 
421:	PFSLGLTTSL TRSDRHYREL SEAIDDDYTD PTKSTYALGL NWSNSILGGF NISGYKTYSY 
481:	DGDNDSSNLN INWNKAFKHA TVSVNWQHQL SASENNEDDG DLFYVNISIP FGRSNTATLY 
541:	TRHDDHKTHY GTGVMGVVSD EMSYYVNAER DHDERETSLN GSISSNLHYT QVSLAAGASG 
601:	SDSRTYNGTM SGGIAVHDQG VTFSPWTIND TFAIAKMDNN IAGVRITSQA GPVWTDFRGN 
661:	AVIPSIQPWR TSGVEIDTAS LPKNVDIGNG TKMIKQGRGA VGKVGFSAIT QRRALLNITL 
721:	SDGKKLPRGV AIEDSEGNYL TTSVDDGVVF LNNIKPDMVL DIKDEQQSCR IHLTFPEDAP 
781:	KDVFYETATG ECQ