TCDB is operated by the Saier Lab Bioinformatics Group
« See all members of the family


1.B.12.1.9
PmpD of 1531 aas (Vasilevsky et al. 2016).

Accession Number:O84818
Protein Name:Probable outer membrane protein PmpD
Length:1531
Molecular Weight:160748.00
Species:Chlamydia trachomatis (strain D/UW-3/Cx) [272561]
Number of TMSs:1
Location1 / Topology2 / Orientation3: Secreted1
Substrate Protein virulence factor

Cross database links:

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
Window Size: Angle:  
Window Size: Angle:  
FASTA formatted sequence
1:	MSSEKDIKST CSKFSLSVVA AILASVSGLA SCVDLHAGGQ SVNELVYVGP QAVLLLDQIR 
61:	DLFVGSKDSQ AEGQYRLIVG DPSSFQEKDA DTLPGKVEQS TLFSVTNPVV FQGVDQQDQV 
121:	SSQGLICSFT SSNLDSPRDG ESFLGIAFVG DSSKAGITLT DVKASLSGAA LYSTEDLIFE 
181:	KIKGGLEFAS CSSLEQGGAC AAQSILIHDC QGLQVKHCTT AVNAEGSSAN DHLGFGGGAF 
241:	FVTGSLSGEK SLYMPAGDMV VANCDGAISF EGNSANFANG GAIAASGKVL FVANDKKTSF 
301:	IENRALSGGA IAASSDIAFQ NCAELVFKGN CAIGTEDKGS LGGGAISSLG TVLLQGNHGI 
361:	TCDKNESASQ GGAIFGKNCQ ISDNEGPVVF RDSTACLGGG AIAAQEIVSI QNNQAGISFE 
421:	GGKASFGGGI ACGSFSSAGG ASVLGTIDIS KNLGAISFSR TLCTTSDLGQ MEYQGGGALF 
481:	GENISLSENA GVLTFKDNIV KTFASNGKIL GGGAILATGK VEITNNSEGI SFTGNARAPQ 
541:	ALPTQEEFPL FSKKEGRPLS SGYSGGGAIL GREVAILHNA AVVFEQNRLQ CSEEEATLLG 
601:	CCGGGAVHGM DSTSIVGNSS VRFGNNYAMG QGVSGGALLS KTVQLAGNGS VDFSRNIASL 
661:	GGGALQASEG NCELVDNGYV LFRDNRGRVY GGAISCLRGD VVISGNKGRV EFKDNIATRL 
721:	YVEETVEKVE EVEPAPEQKD NNELSFLGRA EQSFITAANQ ALFASEDGDL SPESSISSEE 
781:	LAKRRECAGG AIFAKRVRIV DNQEAVVFSN NFSDIYGGAI FTGSLREEDK LDGQIPEVLI 
841:	SGNAGDVVFS GNSSKRDEHL PHTGGGAICT QNLTISQNTG NVLFYNNVAC SGGAVRIEDH 
901:	GNVLLEAFGG DIVFKGNSSF RAQGSDAIYF AGKESHITAL NATEGHAIVF HDALVFENLE 
961:	ERKSAEVLLI NSRENPGYTG SIRFLEAESK VPQCIHVQQG SLELLNGATL CSYGFKQDAG 
1021:	AKLVLAAGAK LKILDSGTPV QQGHAISKPE AEIESSSEPE GAHSLWIAKN AQTTVPMVDI 
1081:	HTISVDLASF SSSQQEGTVE APQVIVPGGS YVRSGELNLE LVNTTGTGYE NHALLKNEAK 
1141:	VPLMSFVASG DEASAEISNL SVSDLQIHVV TPEIEEDTYG HMGDWSEAKI QDGTLVISWN 
1201:	PTGYRLDPQK AGALVFNALW EEGAVLSALK NARFAHNLTA QRMEFDYSTN VWGFAFGGFR 
1261:	TLSAENLVAI DGYKGAYGGA SAGVDIQLME DFVLGVSGAA FLGKMDSQKF DAEVSRKGVV 
1321:	GSVYTGFLAG SWFFKGQYSL GETQNDMKTR YGVLGESSAS WTSRGVLADA LVEYRSLVGP 
1381:	VRPTFYALHF NPYVEVSYAS MKFPGFTEQG REARSFEDAS LTNITIPLGM KFELAFIKGQ 
1441:	FSEVNSLGIS YAWEAYRKVE GGAVQLLEAG FDWEGAPMDL PRQELRVALE NNTEWSSYFS 
1501:	TVLGLTAFCG GFTSTDSKLG YEANTGLRLI F