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1.B.12.5.4
Autotransporter-1, ShdA (2035 aas) (Kingsley et al., 2003).

Accession Number:Q9XCJ4
Protein Name:ShdA
Length:2035
Molecular Weight:207033.00
Species:Salmonella typhimurium [90371]
Number of TMSs:1
Substrate Protein virulence factor

Cross database links:

Pfam: PF03797   

Gene Ontology

GO:0019867 C:outer membrane

References (1)

[1] “Molecular and phenotypic analysis of the CS54 island of Salmonella enterica serotype typhimurium: identification of intestinal colonization and persistence determinants.”  Kingsley R.A.et.al.   12540539

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
Window Size: Angle:  
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FASTA formatted sequence
1:	MSWLQNWREA TAKLKRKYAR VKPISPNQKS EYGQIIKATR AALACAVAAA LGFFSPLAMA 
61:	DNQVSYADAQ PHVLDASTPP ISYSGTDEGA ALYVSGVATV GWQPTTVTGT GLVIETSGGG 
121:	ADDPDGGKYV SNAISLDHYA ILELTDAKIT TTGIYTQGIS AADGSTLRLT DSTLTIDGNF 
181:	GVMTLYTGSE ATLDGTIVEA ANSSSAQVQQ GSTLNVLDGS TITLAQGQIN VVAGNTATDE 
241:	GSTLNLSDSS VSSAGTMSTI QGTNKAALNL TNATITHTNA SGAAVQANNA TTLDITGGNI 
301:	TSAGTGVYIL ASDARIDGAT INADGDGIFI TSKRKLDGYE DLNALTVSDA NVTSKTVALN 
361:	IDGSTTINDP IELTNSTFTA PTAIKLGSKA TIQAEKTMLT GNIVQTDASS SSLSLSQGST 
421:	LTGSVDAMFT TLSLDDTSQW NMTDPSTVGN LTNDGDITLG NASGSTGTLL TVDNTLTLQD 
481:	GSQINATLDT ANSAPIIKAA NVTLDGTLNL SSTATFVAPE TDEHFGSITL IDSQTAITTD 
541:	FDSVTLDADT SAMPDYLTIN AGVDANDNTN YELSTGLSWY AGANSARAAH GTFTVDAGST 
601:	FTVTSELDET TATSNWNGSK LTKQGDGTLI LSNTGNDYGD TEIDGGILAA KDAAALGTGD 
661:	VTIAESATLA LSQGTLDNNV TGEGQIVKSG SDELIVTGDN NYSGGTTISG GTLTADHADS 
721:	LGSGDIDNSG VLKVGEGELE NILSGSGSLV KTGTGELTLS GDNTYSGGTT ITGGTLTADH 
781:	ADSLGSGDID NSGVLKVGEG DLENTLSGSG SLVKTGTGEL TLSGGNDYSG GTTIIGGTLT 
841:	ADHADSLGTG AVANSGVLQV GEGELENTLS GSGSLVKTGT GELTLSGDNS YSGGTTIIGG 
901:	TLTADHADSL GTGAVANSGV LQVGEGELEN TLSGSGSLVK TGTGELTLSG DNSYSGGTTI 
961:	IGGTLTADHA DSLGTGAVAN SGVLQVGEGE LENTLSGSGS LVKTGTGELT LGGDNSYSGA 
1021:	TTITDGTLIA ANVNALGSGN IDNSGTLILD ANGAFELANV TTHSGATTAL AAGSTLDAGQ 
1081:	FTQEDGSTLS IDLGAATDDA VITADSVALG GTLNVTGIGS VTDSWTPEAY TYTLIGSDSA 
1141:	ITTDFDDLTV AGMNREDVDF LTIDGKVDEA DNTHYDLTAS LSWYADRDNA TTDAHGTFTL 
1201:	SDPDGSFNVA ATLTDVDDTL DPGSRWDGKS LTKEGAGTLI LSGDNDYSGG TTINEGTLVA 
1261:	ASTTALGTGL VDNNATLVLD ADGEVSAVGG ITTHSGATTQ LALGTSLDLG DSALIQQDGS 
1321:	TLNVELNSDS VQPLITGSSA TLGGDLVVSD ASLQARASDA EFQSFKLMDM TSDISGDFTS 
1381:	LTMNLTDKPD YLTVTGTINP EDASEYLLTE GLSWNATATS ATPAHGTFTL GAGDSFEVTS 
1441:	VLGDKTGNGD WDGKSLTKLG AGKLTLSGAN TYSGDTNVQE GTLWLSGDGS IGEMGSQQAV 
1501:	NVASGATFGG SNGTTVNGKV TNEGTLVFGN SEETGAIFTF NGDLINMGTM TSGSSSSTPG 
1561:	NTLYVDGNYT GNGGSLYLNT VLGDDDSATD KLVITGDASG TTDLYINGIG DGAQTTNGIE 
1621:	VVDVGGVSTS DAFELKNEVN AGLYTYRLYW NESDNDWYLA SKAQSDDDDS GGDDTPSDGG 
1681:	DDGGNVTPPD DGGDGGNVTP PDDGGDGGDV TPPDHGGDVA PQYRADIGAY MGNQWMARNL 
1741:	QMQTLYDREG SQYRNADGSV WARFKAGKAE SEAVSGNIDM DSNYSQFQLG GDILAWGNGQ 
1801:	QSVTVGVMAS YINADTDSTG NRGADGSQFT SSGNVDGYNL GVYATWFADA QTHSGAYVDS 
1861:	WYQYGFYNNS VESGDAGSES YDSTANAVSL ETGYRYDIAL SNGNTVSLTP QAQVVWQNYS 
1921:	ADSVKDNYGT RIDGQDGDSW TTRLGLRVDG KLYKGSRTVI QPFAEANWLH TSDDVSVSFD 
1981:	DATVKQDLPA NRAELKVGLQ ADIDKQWSVR AQVAGQTGSN DFGDLNGSLN LRYNW