about | faq
TCDB is operated by the Saier Lab Bioinformatics Group
« See all members of the family


1.B.22.3.3
YscC secretin

Accession Number:Q01244
Protein Name:YscC
Length:607
Molecular Weight:67209.00
Species:Yersinia enterocolitica [630]
Location1 / Topology2 / Orientation3: Cell outer membrane1
Substrate proteins

Cross database links:

RefSeq: NP_052413.1   
Entrez Gene ID: 1239144   
Pfam: PF00263    PF03958   

Gene Ontology

GO:0009279 C:cell outer membrane
GO:0005886 C:plasma membrane
GO:0008565 F:protein transporter activity
GO:0009306 P:protein secretion

References (1)

[1] “Analysis of virC, an operon involved in the secretion of Yop proteins by Yersinia enterocolitica.”  Michiels T.et.al.   1860816

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
Window Size: Angle:  
Window Size: Angle:  
FASTA formatted sequence 
1:	MAFPLHSFFK RVLTGTLLLL SSYSWAQELD WLPIPYVYVA KGESLRDLLT DFGANYDATV 
61:	VVSDKINDKV SGQFEHDNPQ DFLQHIASLY NLVWYYDGNV LYIFKNSEVA SRLIRLQESE 
121:	AAELKQALQR SGIWEPRFGW RPDASNRLVY VSGPPRYLEL VEQTAAALEQ QTQIRSEKTG 
181:	ALAIEIFPLK YASASDRTIH YRDDEVAAPG VATILQRVLS DATIQQVTVD NQRIPQAATR 
241:	ASAQARVEAD PSLNAIIVRD SPERMPMYQR LIHALDKPSA RIEVALSIVD INADQLTELG 
301:	VDWRVGIRTG NNHQVVIKTT GDQSNIASNG ALGSLVDARG LDYLLARVNL LENEGSAQVV 
361:	SRPTLLTQEN AQAVIDHSET YYVKVTGKEV AELKGITYGT MLRMTPRVLT QGDKSEISLN 
421:	LHIEDGNQKP NSSGIEGIPT ISRTVVDTVA RVGHGQSLII GGIYRDELSV ALSKVPLLGD 
481:	IPYIGALFRR KSELTRRTVR LFIIEPRIID EGIAHHLALG NGQDLRTGIL TVDEISNQST 
541:	TLNKLLGGSQ CQPLNKAQEV QKWLSQNNKS SYLTQCKMDK SLGWRVVEGA CTPAQSWCVS 
601:	APKRGVL