TCDB is operated by the Saier Lab Bioinformatics Group

1.B.58 Nocardial Hetero-oligomeric Cell Wall Channel (NfpA/B) Family

The cell wall outer membrane of Nocardia farcinica contains a cation-selective cell wall channel, which may be responsible for the limited permeability of the cell wall of N. farcinica to negatively charged antibiotics. Based on partial sequencing of the protein responsible for channel formation derived from N. farcinica ATTC 3318, Klackta et al. (2010) were able to identify the corresponding genes (nfa15890 and nfa15900) within the known genome of N. farcinica IFM 10152. The corresponding genes of N. farcinica ATTC 3318 were separately expressed in Escherichia coli and purified to homogeneity. The proteins were designated NfpA and NfpB, for N. farcinica porin A and B. The proteins together (but not alone) could form channels in lipid bilayer membranes.

The generalized reactin catalyzed by the NfpA/NfpB complex is:

small molecules (out) %u21CC small molecules (in).

References associated with 1.B.58 family:

Klackta C., Knorzer P., Riess F. and Benz R. (2011). Hetero-oligomeric cell wall channels (porins) of Nocardia farcinica. Biochim Biophys Acta. 1808(6):1601-10. 21092733
Nishida, S., Y. Morinaga, H. Obata, and T. Mizuno. (2011). Identification of the N-terminal region of TjZNT2, a Zrt/Irt-like protein family metal transporter, as a novel functional region involved in metal ion selectivity. FEBS J. 278: 851-858. 21205215
Parkin, J. and S. Khalid. (2014). Atomistic molecular-dynamics simulations enable prediction of the arginine permeation pathway through OccD1/OprD from Pseudomonas aeruginosa. Biophys. J. 107: 1853-1861. 25418166
Singh, P.R., H. Bajaj, R. Benz, M. Winterhalter, and K.R. Mahendran. (2015). Transport across the outer membrane porin of mycolic acid containing actinomycetales: Nocardia farcinica. Biochim. Biophys. Acta. 1848: 654-661. 25462168