TCDB is operated by the Saier Lab Bioinformatics Group
« See all members of the family


2.A.2.1.3
Uncharacterized protein, probably a sugar:H+ symporter of 474 aas and 12 TMSs, YjmB,  The gene was from a marine sediment metagenome.

Accession Number:KKK41257
Protein Name:KKK41257.1 putative symporter YjmB [Lokiarchaeum sp. GC14_75]
Length:475
Molecular Weight:
Species:Lokiarchaeum sp. GC14_75 [1538547]
Number of TMSs:12
Substrate

Cross database links:

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
Window Size: Angle:  
Window Size: Angle:  
FASTA formatted sequence
1:	MASLRKDLNS DVMKESSTRK MFMFSMGYFF NIFIIMAFNS YVWTFYVDNL GFVDQQGVSL 
61:	WPIYMAMANV IYTIWSMVVG LLIGFYTDKP LKWTKKWGFH TPWVIIGGLP TILLFFLLFT 
121:	PPSATGVGSA VPILLYYIII VCVFDVFFSL MQTHTFGGFG AHFRGESERR KAGLMTQIFT 
181:	FIANFLTIGV WSLIITPGDP TSFKLAAMIS LIILGVSLVV FLPGSKESNE IKERFIVGYN 
241:	NAEKISFFKT MKIVIKQKNF MLVLLAYIFF MIAMGLISMN SVNFIDDVLV VDQEIRTIES 
301:	SLMLLSSLLT IPIWFKVAQK IDHSTLLSLG LFIFGLVVLC NFFVMNIFQL LLIALLRGIA 
361:	IAMFLIMLSP LFADVYDEIA VKTQKHHQAT LLGIRNFFVK ISVTIQSFIV AIIHIVTLYN 
421:	PDSPSGKAIF GIRLIQGILP FIFCVIGALI FYKWYDLKGK KKQEIMQKLH EMGL