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2.A.47.3.4
The pmf-dependent citrate uptake system, Cit1 (Urbany and Neuhaus, 2008)

Accession Number:Q6D017
Protein Name:Cit1
Length:484
Molecular Weight:52351.00
Species:Erwinia carotovora subsp. atroseptica (Pectobacterium atrosepticum) [29471]
Number of TMSs:12
Location1 / Topology2 / Orientation3: Membrane1 / Multi-pass membrane protein2
Substrate Citrate

Cross database links:

HEGENOM: HBG321139
RefSeq: YP_052071.1   
Entrez Gene ID: 2883374   
Pfam: PF00939   
BioCyc: ECAR218491:ECA3984-MONOMER   
KEGG: eca:ECA3984   

Gene Ontology

GO:0016020 C:membrane
GO:0005215 F:transporter activity
GO:0006814 P:sodium ion transport
GO:0055085 P:transmembrane transport

References (1)

[1] “Genome sequence of the enterobacterial phytopathogen Erwinia carotovora subsp. atroseptica and characterization of virulence factors.”  Bell K.S.et.al.   15263089

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
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FASTA formatted sequence
1:	MKTKTSYGLN WLAMIVILVI AAFFWQMEPP AGLNPAAWHS AVIFVATIVC IVANVLPIGA 
61:	IGIISITLFA LTYAAGDKTA SGAIQTALSD LNSSLIWLIV VAFMIARGFI KTGLGRRIAL 
121:	QMIRLLGKRT LGLAYGLAFA DLVLSPAMPS NTARCGGIIY PIADSLSRSF DSKPEDASRS 
181:	KIGTFLITCI GNVNDVTAAM FMTAYTGNLL AVKLAANAGV TITWGSWFLA ALVPCLISLA 
241:	IVPLLVYWLT KPEIRHTPDA PKLAVAELAK MGSISRGEWL MAFTVILLLV LWIFGDRLGV 
301:	DATTASFVGL SFLLLTGVLS WEDVKNEKGA WDTLIWFAAL LMMANQLKKL GFTNWFGDLI 
361:	GSNIGHLMQG TSWVLVLLLL NAAYFYTHYF FASGNAQIAA LFAVFLGVGI NLNIPAVPMA 
421:	FMLAFTSSLY CSLTQYTHAR GPILFGAGYV PTAVWWRTGF VVSLVNQAIF MGAGLLWWKA 
481:	IDLY