TCDB is operated by the Saier Lab Bioinformatics Group
« See all members of the family


2.A.67.2.5
The rice iron(III)-deoxymugineic acid transporter, YSL18 (specifically expressed in reproductive organs and phloem of lamina joints) (Aoyama et al., 2009).

Accession Number:Q941V3
Protein Name:Probable metal-nicotianamine transporter YSL18
Length:679
Molecular Weight:73819.00
Species:Oryza sativa subsp. japonica (Rice) [39947]
Number of TMSs:14
Location1 / Topology2 / Orientation3: Membrane1 / Multi-pass membrane protein2
Substrate Fe3+-deoxymugineic acid

Cross database links:

HEGENOM: HBG606963
RefSeq: NP_001044692.1   
Entrez Gene ID: 4327424   
Pfam: PF03169   
KEGG: osa:4327424   

Gene Ontology

GO:0016021 C:integral to membrane
GO:0055085 P:transmembrane transport

References (5)

[1] “OsYSL2 is a rice metal-nicotianamine transporter that is regulated by iron and expressed in the phloem.”  Koike S.et.al.   15255870
[2] “The genome sequence and structure of rice chromosome 1.”  Sasaki T.et.al.   12447438
[3] “The map-based sequence of the rice genome.”  International rice genome sequencing project (IRGSP)et.al.   16100779
[4] “Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana.”  The rice annotation project (RAP)et.al.   17210932
[5] “Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.”  The rice full-length cDNA consortiumet.al.   12869764

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
Window Size: Angle:  
Window Size: Angle:  
FASTA formatted sequence
1:	MESVGDPRDG PSTERAFEGQ PVPPWTEQVT LRAVVASVAL GVALSSVMMN LVFTSGIIPS 
61:	LNISAGLLGF FLLKAWTRLL DQLGSPGRPF TRQENAVVQT CVVACASMTY SGGFGSYLLA 
121:	MDRKTAEKTS TGDDSSASVS EPEFGRMMAF FFLVSFVGLL AIVPMRKTMI IRHRLTFPSG 
181:	SATAHLINSF HTPHGARQAK RQVSLVLRSS LASLFWSIFQ WFYTGGPNCG FTSFPTFGLS 
241:	AFNRGFYISL NGTYVGIGMI SPHLINVSML FGSIISWGIM RPYIRSKRGI WYDADLQETN 
301:	LKSFSGYKVF CAIAMILGDG IFQLVAISLR TIHTVRHHQV AAETLRSFSD VDAMPRPVMS 
361:	FDDRRRTQVF LREHIPSTFA ISGYVVLATV STVVIPLMYG QVRYYHVAAA YAFAPVLAFC 
421:	NAYGTGVAET NFSAQYNKLV ILMFASWIGI KNGGIVGSLV ICGIVSSIVS TASDFMSDFK 
481:	TSYLTLTSPR ATLVSQVIGT AMGCVVNPAV FTVFHHFYEM NPNKTYQAPL AKIYRGIAVL 
541:	GAGGLELPKY CLAISATFFV LALAVCAMRE VAAHGKWRAE PYIPSVTGMA VSFLLVPAVS 
601:	IDMCIGSLIV FLWNRNDKLG SQVFGPVLAS GLICGDGLFS IPYALLARYD VTPPICIRFL 
661:	GRVQNDKLDA FLASKAKAG