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2.A.7.3.37
The DUF6 domain transporter homologue, TrH3 (299 aas; 10 TMSs in a 2 + 8 arrangement)

Accession Number:Q4FKW8
Protein Name:TrH3
Length:299
Molecular Weight:34341.00
Species:Pelagibacter ubique [198252]
Number of TMSs:10
Location1 / Topology2 / Orientation3: Mitochondrion membrane1 / Multi-pass membrane protein2
Substrate Unknown

Cross database links:

eggNOG: COG0697
HEGENOM: HBG740440
RefSeq: YP_266774.1   
Entrez Gene ID: 3517465   
Pfam: PF00892   
BioCyc: CPEL335992:SAR11_1367-MONOMER   
KEGG: pub:SAR11_1367   

Gene Ontology

GO:0016020 C:membrane

References (1)

[1] “Genome streamlining in a cosmopolitan oceanic bacterium.”  Giovannoni S.J.et.al.   16109880

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
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FASTA formatted sequence
1:	MINKNNVAYI FLFLAALFWS GNFLVGKFAS QYQVPPFSLN FYRWLFAWLI LAPFTIQELF 
61:	NKRSYILENY KYYTILGITS VTIFNSIVYY SLNFTQVISG VLMISTIPVM IIFISSILKI 
121:	EKTNTFQIMG VTCSFIGVVL IITKANLGIL MNLDFNKGDI TMVFGMLSWA TYSALLKKKK 
181:	HELSQLGLLE VVISFGFIFL IPIYFIEYQM GFRIVLNQNF YMILFYVVLF PGLASFIFWI 
241:	KGVALIGANR AGVFLHMMPI LSAIMAMIIF NEKFMFYHML GAIFILTGIL LSNRKIKNA