TCDB is operated by the Saier Lab Bioinformatics Group
« See all members of the family


2.A.7.5.2
Probable ribose transporter, RbsU

Accession Number:Q9X4M3
Protein Name:RbsU
Length:294
Molecular Weight:31169.00
Species:Lactobacillus sakei [314315]
Number of TMSs:10
Location1 / Topology2 / Orientation3: Cell membrane1 / Multi-pass membrane protein2
Substrate Ribose

Cross database links:

eggNOG: COG4975
HEGENOM: HBG338536
RefSeq: YP_394809.1   
Entrez Gene ID: 3777624   
Pfam: PF06800   
BioCyc: LSAK314315:LSA0200-MONOMER   
KEGG: lsa:LSA0200   

Gene Ontology

GO:0016021 C:integral to membrane
GO:0005886 C:plasma membrane
GO:0015153 F:rhamnose transmembrane transporter activity
GO:0008645 P:hexose transport

References (2)

[1] “Ribose utilization in Lactobacillus sakei: analysis of the regulation of the rbs operon and putative involvement of a new transporter.”  Stentz R.et.al.   10941799
[2] “The complete genome sequence of the meat-borne lactic acid bacterium Lactobacillus sakei 23K.”  Chaillou S.et.al.   16273110

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
Window Size: Angle:  
Window Size: Angle:  
FASTA formatted sequence
1:	MNAVNILIGL MPMIGWGIFP VIVGKIGGKP ASQILGTTFG TLILAIVVAI FRGTPIPETK 
61:	TFIFCLISGA CWALAQIITF HVFETMGVSR TMPITTGFQL VGASLWGVFV LGNWSSSQSK 
121:	LIGFTAIALI IIGVYLTAWS EDKSSASKSG AVKGILLLLV GELGYLGYSA FPQAVSADGF 
181:	QGFLPQAIGM TIVGIIFGLT QTKKDYKPFK EATSYKNIFS GFFFAFAALT YLISAQPSVN 
241:	GLATGFVLSQ TSVIFATIGG IYILKEKKSK KEMIAVMVGL LLVLVAGSVT AFIK