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2.A.7.7.1
The chloramphenicol-sensitive protein, RarD

Accession Number:O68827
Protein Name:RarD aka PA3473
Length:299
Molecular Weight:33469.00
Species:Pseudomonas aeruginosa [287]
Number of TMSs:10
Location1 / Topology2 / Orientation3: Cell membrane1 / Multi-pass membrane protein2
Substrate Unknown

Cross database links:

HEGENOM: HBG649355
RefSeq: NP_252163.1   
Entrez Gene ID: 878939   
Pfam: PF00892   
BioCyc: PAER208964:PA3473-MONOMER   
KEGG: pae:PA3473   

Gene Ontology

GO:0016021 C:integral to membrane
GO:0005886 C:plasma membrane
GO:0006810 P:transport

References (1)

[1] “Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen.”  Stover C.K.et.al.   10984043

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
Window Size: Angle:  
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FASTA formatted sequence
1:	MRISGQGVLL SLAASVLFVT LPGYVHLLEP LDSLQVVAHR VVWSIPMVFL LVVATRQWPT 
61:	LRAAWCRLFA EPWLLACFPL TAAMMLLQWG IFIWAPLAGK TLELSLGYFL LPLAMVLVGR 
121:	VFYGERLTPL QAIAVACALA GVLHEFWLTR AFSWVSLVTA LGYPPYFMLR RRMGVDALSG 
181:	FVFEMLFLLP LALAALYWLG DESQAFREAP RLWLLLPMLG LISALAFGAM MASSRLLPMG 
241:	LFGILSYVEP VLLFLVAVLF LGEAFRPEQL WTYAPIWLAV LLTGWDSARL LRKQARRGI