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2.A.8.1.7
Inner membrane permease YgbN

Accession Number:Q46892
Protein Name:Inner membrane permease ygbN
Length:454
Molecular Weight:46770.00
Species:Escherichia coli (strain K12) [83333]
Number of TMSs:14
Location1 / Topology2 / Orientation3: Cell inner membrane1 / Multi-pass membrane protein2
Substrate Unknown

Cross database links:

Genevestigator: Q46892
EchoBASE: EB2911
EcoGene: EG13108
eggNOG: COG2610
HEGENOM: HOG000237114
Entrez Gene ID: 947208   
Pfam: PF02447   
KEGG: eco:b2740   

Gene Ontology

GO:0016021 C:integral to membrane
GO:0005886 C:plasma membrane
GO:0015128 F:gluconate transmembrane transporter activity

References (3)

[1] “The complete genome sequence of Escherichia coli K-12.”  Blattner F.R.et.al.   9278503
[2] “Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110.”  Hayashi K.et.al.   16738553
[3] “Global topology analysis of the Escherichia coli inner membrane proteome.”  Daley D.O.et.al.   15919996

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
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FASTA formatted sequence
1:	MSTITLLCIA LAGVIMLLLL VIKAKVQPFV ALLLVSLLVA LAAGIPAGEV GKVMIAGMGG 
61:	VLGSVTIIIG LGAMLGRMIE HSGGAESLAN YFSRKLGDKR TIAALTLAAF FLGIPVFFDV 
121:	GFIILAPIIY GFAKVAKISP LKFGLPVAGI MLTVHVAVPP HPGPVAAAGL LHADIGWLTI 
181:	IGIAISIPVG VVGYFAAKII NKRQYAMSVE VLEQMQLAPA SEEGATKLSD KINPPGVALV 
241:	TSLIVIPIAI IMAGTVSATL MPPSHPLLGT LQLIGSPMVA LMIALVLAFW LLALRRGWSL 
301:	QHTSDIMGSA LPTAAVVILV TGAGGVFGKV LVESGVGKAL ANMLQMIDLP LLPAAFIISL 
361:	ALRASQGSAT VAILTTGGLL SEAVMGLNPI QCVLVTLAAC FGGLGASHIN DSGFWIVTKY 
421:	LGLSVADGLK TWTVLTTILG FTGFLITWCV WAVI