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2.A.85.1.1
YccS of unknown specificity

Accession Number:P75870
Protein Name:YccS aka B0960
Length:717
Molecular Weight:81668.00
Species:Escherichia coli [83333]
Number of TMSs:12
Location1 / Topology2 / Orientation3: Cell inner membrane1 / Multi-pass membrane protein2
Substrate Unknown

Cross database links:

Genevestigator: P75870
EchoBASE: EB3485
EcoGene: EG13721
eggNOG: COG1289
HEGENOM: HBG644242
DIP: DIP-11498N
RefSeq: AP_001590.1    NP_415480.2   
Entrez Gene ID: 947001   
BioCyc: EcoCyc:G6495-MONOMER    ECOL168927:B0960-MONOMER   
KEGG: ecj:JW5128    eco:b0960   

Gene Ontology

GO:0016021 C:integral to membrane
GO:0005886 C:plasma membrane

References (4)

[1] “A 718-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 12.7-28.0 min region on the linkage map.”  Oshima T.et.al.   8905232
[2] “The complete genome sequence of Escherichia coli K-12.”  Blattner F.R.et.al.   9278503
[3] “Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110.”  Hayashi K.et.al.   16738553
[4] “Global topology analysis of the Escherichia coli inner membrane proteome.”  Daley D.O.et.al.   15919996

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
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FASTA formatted sequence
1:	MLSPLLKRYT WNSAWLYYAR IFIALCGTTA FPWWLGDVKL TIPLTLGMVA AALTDLDDRL 
61:	AGRLRNLIIT LFCFFIASAS VELLFPWPWL FAIGLTLSTS GFILLGGLGQ RYATIAFGAL 
121:	LIAIYTMLGT SLYEHWYQQP MYLLAGAVWY NVLTLIGHLL FPVRPLQDNL ARCYEQLARY 
181:	LELKSRMFDP DIEDQSQAPL YDLALANGLL MATLNQTKLS LLTRLRGDRG QRGTRRTLHY 
241:	YFVAQDIHER ASSSHIQYQT LREHFRHSDV LFRFQRLMSM QGQACQQLSR CILLRQPYQH 
301:	DPHFERAFTH IDAALERMRD NGAPADLLKT LGFLLNNLRA IDAQLATIES EQAQALPHNN 
361:	DENELADDSP HGLSDIWLRL SRHFTPESAL FRHAVRMSLV LCFGYAIIQI TGMHHGYWIL 
421:	LTSLFVCQPN YNATRHRLKL RIIGTLVGIA IGIPVLWFVP SLEGQLVLLV ITGVLFFAFR 
481:	NVQYAHATMF ITLLVLLCFN LLGEGFEVAL PRVIDTLIGC AIAWAAVSYI WPDWQFRNLP 
541:	RMLERATEAN CRYLDAILEQ YHQGRDNRLA YRIARRDAHN RDAELASVVS NMSSEPNVTP 
601:	QIREAAFRLL CLNHTFTSYI SALGAHREQL TNPEILAFLD DAVCYVDDAL HHQPADEERV 
661:	NEALASLKQR MQQLEPRADS KEPLVVQQVG LLIALLPEIG RLQRQITQVP QETPVSA