TCDB is operated by the Saier Lab Bioinformatics Group
« See all members of the family


3.A.1.112.2
Pediocin PA-1 exporter

Accession Number:P36497
Protein Name:PedD aka PAPD
Length:724
Molecular Weight:81652.00
Species:Pediococcus acidilactici [1254]
Number of TMSs:6
Location1 / Topology2 / Orientation3: Cell membrane1 / Multi-pass membrane protein2
Substrate Pediocin

Cross database links:

RefSeq: NP_857605.1   
Entrez Gene ID: 1090332   
Pfam: PF00664    PF00005    PF03412   

Gene Ontology

GO:0016021 C:integral to membrane
GO:0005886 C:plasma membrane
GO:0005524 F:ATP binding
GO:0042626 F:ATPase activity, coupled to transmembrane m...
GO:0008234 F:cysteine-type peptidase activity
GO:0019534 F:toxin transporter activity
GO:0043213 P:bacteriocin transport
GO:0006508 P:proteolysis
GO:0055085 P:transmembrane transport

References (2)

[1] “Cloning, expression, and nucleotide sequence of genes involved in production of pediocin PA-1, and bacteriocin from Pediococcus acidilactici PAC1.0.”  Marugg J.D.et.al.   1514784
[2] “Complete nucleotide sequence of pSMB 74, a plasmid encoding the production of pediocin AcH in Pediococcus acidilactici.”  Motlagh A.M.et.al.   7764941

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
Window Size: Angle:  
Window Size: Angle:  
FASTA formatted sequence
1:	MWTQKWHKYY TAQVDENDCG LAALNMILKY YGSDYMLAHL RQLAKTTADG TTVLGLVKAA 
61:	KHLNLNAEAV RADMDALTAS QLPLPVIVHV FKKNKLPHYY VVYQVTENDL IIGDPDPTVK 
121:	TTKISKSQFA KEWTQIAIII APTVKYKPIK ESRHTLIDLV PLLIKQKRLI GLIITAAAIT 
181:	TLISIAGAYF FQLIIDTYLP HLMTNRLSLV AIGLIVAYAF QAIINYIQSF FTIVLGQRLM 
241:	IDIVLKYVHH LFDLPMNFFT TRHVGEMTSR FSDASKIIDA LGSTTLTLFL DMWILLAVGL 
301:	FLAYQNINLF LCSLVVVPIY ISIVWLFKKT FNRLNQDTME SNAVLNSAII ESLSGIETIK 
361:	SLTGEATTKK KIDTLFSDLL HKNLAYQKAD QGQQAIKAAT KLILTIVILW WGTFFVMRHQ 
421:	LSLGQLLTYN ALLAYFLTPL ENIINLQPKL QAARVANNRL NEVYLVESEF SKSREITALE 
481:	QLNGDIEVNH VSFNYGYCSN ILEDVSLTIP HHQKITIVGM SGSGKTTLAK LLVGFFEPQE 
541:	QHGEIQINHH NISDISRTIL RQYINYVPQE PFIFSGSVLE NLLLGSRPGV TQQMIDQACS 
601:	FAEIKTDIEN LPQGYHTRLS ESGFNLSGGQ KQRLSIARAL LSPAQCFIFD ESTSNLDTIT 
661:	EHKIVSKLLF MKDKTIIFVA HRLNIASQTD KVVVLDHGKI VEQGSHRQLL NYNGYYARLI 
721:	HNQE