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3.A.1.113.1
Modified cyclic peptide (syringomycin) exporter, SyrD

Accession Number:P33951
Protein Name:SyrD
Length:566
Molecular Weight:63196.00
Species:Pseudomonas syringae (pv [321]
Number of TMSs:7
Location1 / Topology2 / Orientation3: Cell inner membrane1 / Multi-pass membrane protein2
Substrate Syringomycin

Cross database links:

Pfam: PF00664    PF00005   

Gene Ontology

GO:0016021 C:integral to membrane
GO:0005886 C:plasma membrane
GO:0005524 F:ATP binding
GO:0042626 F:ATPase activity, coupled to transmembrane m...
GO:0015197 F:peptide transporter activity
GO:0017000 P:antibiotic biosynthetic process
GO:0015833 P:peptide transport
GO:0055085 P:transmembrane transport

References (1)

[1] “SyrD is required for syringomycin production by Pseudomonas syringae pathovar syringae and is related to a family of ATP-binding secretion proteins.”  Quigley N.B.et.al.   8231810

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
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FASTA formatted sequence
1:	MKTKQEKKAR PGSIMRLLWS SHPWLTFFTL LTGLISGVAS IAVVNVINQA IHEETFQRQS 
61:	LFWFVGLSVV ALLFRNGASL FPAYASMRIM TRLRIALCRK ILGTPLEEVD RRGAPNVLTL 
121:	LTSDIPQLNA TLLIMPTILV ESAVFLFGIA YLAYLSWVVF AITISLMILG VAMYLLFFMG 
181:	GMKFTHKVRD EFTAFNEYTH ALVFGLKELK LNGIRRRWFS RSAIQESSVR VAKYNYIERL 
241:	WFTAAENVGQ LTLSLLVGCL LFAAPMFAVI DAKTMSASVL AVLYIMGPLV MLVSAMPMLA 
301:	QGRIACTRLA DFGFSINEPH PEPETSDADN VLLLDHKKSW GSIQLKNVHM NYKDPQSSSG 
361:	FALGPIDLTI HSGELVYIVG GNGCGKSTLA KVFCGLYIPQ EGQLLLDGAA VTDDSRGDYR 
421:	DLFSAVFSDF HLFNRLIGPD EKEHPSTDQA QTYLSTLGLE DKVKIEGLGY STTTALSYGQ 
481:	QKRLALVCAY LEDRPIYLLD EWAADQDPPF KRFFYEELLP DLKRRGKTIL IITHDDQYFQ 
541:	LADRIIKLAD GCIVSDVKCA VEGKRA