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3.A.1.133.2
A 6TMS homologue of YydJ (ORF1) of 280aas

Accession Number:Q26C21
Protein Name:ORF1
Length:280
Molecular Weight:32157.00
Species:Flavobacteria bacterium BBFL7 [156586]
Number of TMSs:6
Location1 / Topology2 / Orientation3: Cell membrane1 / Multi-pass membrane protein2
Substrate Unknown

Cross database links:

Gene Ontology

GO:0016021 C:integral to membrane

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
Window Size: Angle:  
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FASTA formatted sequence
1:	MKRLLDIEFH KFKYSKSSKI LTIIYLVIVI LLMFTGLIQV DINGFKGSLS DLGIFNFPYI 
61:	WHLSTYMVSF LKIFIAIVIV SLTANEYSNR TLKQNLIDGL SKKELILSKL YLAITLALLT 
121:	TMIVFIASLT LGLFYSDYLE IGIVFSKMEY LPAFFISHLM FFCFCLFAGV LVKRSAFALG 
181:	LIGVWWILEL VIRGLSSFID FKYELDTWNV IQHILPLESA SLLIKEPFTK ISIVQGGIEQ 
241:	LTQGQYIKDY GVSLINVATS MVWSFLFIFW SYKILKSRDL