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3.A.1.201.37
ABC protei, MDR1 of 1288 aas with 12 TMSs and a domain order of MCMC. Transports alkaloids (Lefèvre and Boutry 2018).

Accession Number:BAM11099
Protein Name:BAM11099.1 ABC protein [Coptis japonica]
Length:1289
Molecular Weight:
Species:Coptis japonica [3442]
Number of TMSs:12
Substrate

Cross database links:

External Searches:

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  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
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FASTA formatted sequence
1:	MNTSCKVEKH KDAKEPYGED DSENTGREAS KRSVLLDRLF SLSEKAKAGE GRTKSVPLYW 
61:	LFSFADPTDI VLMTVGTVAA LLNGLSNPLM ALILGQLVDC FGQNAHTKNL LVHEVSKVSL 
121:	RFVYLGIGSA AAAFFQLACW KITGERQSAR IRHLYLKAIL RQDITFFDKE TNTGEVVGRV 
181:	SGGVVLIQDA MGEKVGKFVQ LGSSFLGGFM IAFRKGWLLV LVLMSTVPFL VLCGASMSKV 
241:	VNKLAARSQV AYSEAGAIVE QTISSIRTVA SFTGERQAIR QYNRSLDTSY KSSVQEGLAA 
301:	GIGFGMVMFT VFCSYGIASW LGALFIITRT YTGGDVVCII YAVVTGSMSL GEASPCMKAF 
361:	AAGQAAAFNM FETIGRKPDI DSFDTGGITL DDICGDIELK EIHFSYPTRP NEKVFSGFSL 
421:	SIPSGTIVAL VGESGSGKST VISLIERFYD PQAGAVHIDG INLKDFQIRW IRGKIGLVSQ 
481:	EPVLFASSIK DNIAYGKDNP TMEEIRAAAE LANAATFIDK LPQGLETMVG DYGTQLSGGQ 
541:	KQRVAIARAI LRDPKILLLD EATSALDAQS ERIVQEALNR IMSKRTTIVV AHQLSTVRNS 
601:	DVIAVIHQGK IVEQGSHSEL VNIHGTYSQL ISLQEVNQDS EKETTNDQDD PEGSINSHQK 
661:	SKHGLPDGGP LSHPLLTGSV HLPAVQENYK TESIELTTTE ASQQPYKVPL HRLAYLNKPE 
721:	FPLLILGTFA SVINGSILPL VGVLFSDLIY TFYEPRNRLL SDSHRLLWMF IALGFIGFIA 
781:	ATGRLYFFGV AGSRLIRRIR SMSFEKVVHM EIGWFDNSQN SSSTIGTRLS MDVASIRGLL 
841:	GDTLSLVVQN VSSVIIALVI AIEANWQLAL LVFTLLPLLG ASGWAYVKFT EGFSGDAKTM 
901:	YEESSHVAND ALRHIRTVAS FCAEEKVITL YKSKCQRPRS TAIKLGVMSG IDYGISFFLL 
961:	FAFYAISFYV GSRLVEDGKT GFSNIFRVFF ALCMAGIGIS QRSSLATDAT KTKACTASVF 
1021:	AILDRKSEID PSDSSGMTLE KVKGEIIFQH ASFTYPIRPD VQILRDLCFT VEPGKTVALI 
1081:	GESGCGKSTV ISLLQRFYDL DSGQIMLDGI AIKNFQLRWL RKQIGLVSQE PLLFNDTIRA 
1141:	NIEYGKEGES SEAEIIAAAK AANAHKFISG MKQGYDTVVG ERGIQLSGGQ KQRVAIARAI 
1201:	LKSPKILLLD EATSALDAES ERVVQDALDQ VMINRTTIVV AHKFYTIKGA DSIAVIKNGV 
1261:	IIEKGRHEDL LNIKNGVYSF LVAHQMSS