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3.A.1.204.3
Putative ABC Transporter WHT-1

Accession Number:Q11180
Protein Name:ABC transporter ATP-binding protein/permease wht-1
Length:598
Molecular Weight:66906.00
Species:Caenorhabditis elegans [6239]
Number of TMSs:7
Location1 / Topology2 / Orientation3: Membrane1 / Multi-pass membrane protein2
Substrate Unknown

Cross database links:

eggNOG: meNOG06481
HEGENOM: HBG382291
RefSeq: NP_498322.1   
Entrez Gene ID: 175859   
Pfam: PF01061    PF00005   
KEGG: cel:C05D10.3   

Gene Ontology

GO:0016021 C:integral to membrane
GO:0005524 F:ATP binding
GO:0016887 F:ATPase activity
GO:0006810 P:transport

References (2)

[1] “Genome sequence of the nematode C. elegans: a platform for investigating biology.”  The C. elegans sequencing consortiumet.al.   9851916
[2] “High-throughput in vivo analysis of gene expression in Caenorhabditis elegans.”  Hunt-Newbury R.et.al.   17850180

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
Window Size: Angle:  
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FASTA formatted sequence
1:	MPKRRVKEIL HNVSGMAESG KLLAILGSSG AGKTTLMNVL TSRNLTNLDV QGSILIDGRR 
61:	ANKWKIREMS AFVQQHDMFV GTMTAREHLQ FMARLRMGDQ YYSDHERQLR VEQVLTQMGL 
121:	KKCADTVIGI PNQLKGLSCG EKKRLSFASE ILTCPKILFC DEPTSGLDAF MAGHVVQALR 
181:	SLADNGMTVI ITIHQPSSHV YSLFNNVCLM ACGRVIYLGP GDQAVPLFEK CGYPCPAYYN 
241:	PADHLIRTLA VIDSDRATSM KTISKIRQGF LSTDLGQSVL AIGNANKLRA ASFVTGSDTS 
301:	EKTKTFFNQD YNASFWTQFL ALFWRSWLTV IRDPNLLSVR LLQILITAFI TGIVFFQTPV 
361:	TPATIISING IMFNHIRNMN FMLQFPNVPV ITAELPIVLR ENANGVYRTS AYFLAKNIAE 
421:	LPQYIILPIL YNTIVYWMSG LYPNFWNYCF ASLVTILITN VAISISYAVA TIFANTDVAM 
481:	TILPIFVVPI MAFGGFFITF DAIPSYFKWL SSLSYFKYGY EALAINEWDS IKVIPECFNS 
541:	SMTAFALDSC PKNGHQVLES IDFSASHKIF DISILFGMFI GIRIIAYVAL LIRSYNNT