TCDB is operated by the Saier Lab Bioinformatics Group
« See all members of the family


3.A.5.4.1
SecY

Accession Number:P0A4H1
Protein Name:Preprotein translocase subunit secY
Length:439
Molecular Weight:47151.00
Species:Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (Anacystis nidulans) [269084]
Number of TMSs:10
Location1 / Topology2 / Orientation3: Cell membrane1 / Multi-pass membrane protein2
Substrate proteins

Cross database links:

eggNOG: COG0201
HEGENOM: HBG565931
RefSeq: YP_172593.1   
Entrez Gene ID: 3200116   
Pfam: PF00344   
BioCyc: SELO269084:SYC1883_D-MONOMER   
KEGG: syc:syc1883_d   

Gene Ontology

GO:0016021 C:integral to membrane
GO:0005886 C:plasma membrane
GO:0015450 F:P-P-bond-hydrolysis-driven protein transmem...
GO:0015031 P:protein transport
GO:0055085 P:transmembrane transport

References (2)

[1] “Organization of a large gene cluster encoding ribosomal proteins in the cyanobacterium Synechococcus sp. strain PCC 6301: comparison of gene clusters among cyanobacteria, eubacteria and chloroplast genomes.”  Sugita M.et.al.   9300823
[2] “Complete nucleotide sequence of the freshwater unicellular cyanobacterium Synechococcus elongatus PCC 6301 chromosome: gene content and organization.”  Sugita C.et.al.   17211581

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
Window Size: Angle:  
Window Size: Angle:  
FASTA formatted sequence
1:	MVVSRGKTPN AQETFLQMAQ ASGLRGRILI TVGLLILCRL GIFIPVPGID RVAFSNDLQG 
61:	NANLGGVIGF LDIFSGGGLS ALGVFALGIL PYINASIILQ LLTAAVPALE DLQKNEGEAG 
121:	RRKIAQLTRY VSLGWALLQS IVIAVWVTRY AVTPGPLFTI QTALALVAGS MFVMWISELI 
181:	TERGIGNGAS LLIFLNIVAT LPRSLQQTLE LAQSGDRSTV GGIVILLIVF LATIVGIVFV 
241:	QEGTRRIPVV SARRQVGNRV YSERSSYLPL RLNQGGVMPI IFASAILVLP FSLANFTSNE 
301:	VVLRIANYLS PNGPTPWIYA LFYLVLIVAF SYFYSSLILN PVDLAQNLKK MGSSIPGVRP 
361:	GRATSQYVQG VLNRLTILGA VFLGLVAIIP TAVEGATRIR TFQGFGATSL LILVGVAIDT 
421:	AKQVQTYVIS QRYEGMVKD