TCDB is operated by the Saier Lab Bioinformatics Group
« See all members of the family


3.E.1.3.5
Phoborhodopsin (sensory rhodopsin II) of 249 aas and 7 TMSs.  The photochemistry and proton transport have been reviewed (Kamo et al. 2001) and the crystal structure is known (Kandori and Kamo 2002).

Accession Number:Q8U4S8
Protein Name:Phoborhodopsin
Length:249
Molecular Weight:25447.00
Species:Halorubrum chaoviator (strain DSM 11365 / JCM 9573 / AUS-1) [335819]
Number of TMSs:7
Substrate

Cross database links:

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
Window Size: Angle:  
Window Size: Angle:  
FASTA formatted sequence
1:	MLVDTTVWAW IGALAMGAGT VPPLWAWLSG SSATDESHGV YYGTLAGVTG VAALAYLAMA 
61:	LGVGTLSTAA GELEVVRYVD WLVTTPLILL YLGLLARPSR RVLTGLIGVD VVVIAGGVTG 
121:	AATGGAVSWA AFAVGGGAYL ALVYGLLVAL PRSASAEGDR VRAVFGTLRN ITVVLWTLYP 
181:	VVRLLAPTGF GLLTSATEML VFVYLDIVSK VGFVVIAVAG ADALDRLGAD EFAAADSAAE 
241:	ERTAALGDD