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3.E.1.6.4
Bacteriorhodopsin-like circadian clock related protein (Okamoto and Hastings, 2003)

Accession Number:Q8GZE7
Protein Name:Rhodopsin
Length:262
Molecular Weight:28785.00
Species:Pyrocystis lunula (Dinoflagellate) [2972]
Number of TMSs:7
Substrate H+

Cross database links:

Pfam: PF01036   

Gene Ontology

GO:0016020 C:membrane
GO:0005216 F:ion channel activity
GO:0006811 P:ion transport

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
Window Size: Angle:  
Window Size: Angle:  
FASTA formatted sequence
1:	MAPIPDGFTY GQWSLVYNSL SFGIAGMGCA TIFFWLQLPN VSKSYRTALT ITGLVTAIAT 
61:	YHYVRIFNSW VDAFKVVNVN GGDYTVTLLG APFNDAYRYV DWLLTVPLLL IELILVMKLP 
121:	KAETVKLSWN LGVASAVMVA LGYPGEIQDD LLVRWFWWAM AMIPFYYVVV TLVNGLSDAT 
181:	AKQPDSVKSL VVTARYLTVI SWLTYPGVYI IKSMGLAGNI ATTYEQVGYS VADVVAKAVF 
241:	GVLIWAIAAG KSDEEEKNGL LG