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5.A.1.2.5
Cytochrome c-type biogenesis CcdA-like chloroplastic protein (Cytochrome b6f biogenesis protein CCDA)

Accession Number:Q9M5P3
Protein Name:Cytochrome c-type biogenesis ccda-like chloroplastic protein
Length:354
Molecular Weight:36530.00
Species:Arabidopsis thaliana (Mouse-ear cress) [3702]
Number of TMSs:9
Location1 / Topology2 / Orientation3: Plastid1 / Multi-pass membrane protein2
Substrate Electrons

Cross database links:

Genevestigator: Q9M5P3
eggNOG: COG0785
HEGENOM: HOG000017410
Entrez Gene ID: 835517   
Pfam: PF02683   
KEGG: ath:AT5G54290   

Gene Ontology

GO:0009534 C:chloroplast thylakoid
GO:0009535 C:chloroplast thylakoid membrane
GO:0016021 C:integral to membrane
GO:0055035 C:plastid thylakoid membrane
GO:0045454 P:cell redox homeostasis
GO:0010190 P:cytochrome b6f complex assembly
GO:0022900 P:electron transport chain
GO:0006810 P:transport

References (5)

[1] “Assembly of chloroplast cytochromes b and c.”  Nakamoto S.S.et.al.   10946110
[2] “Structural analysis of Arabidopsis thaliana chromosome 5. V. Sequence features of the regions of 1,381,565 bp covered by twenty one physically assigned P1 and TAC clones.”  Kaneko T.et.al.   9679202
[3] “Empirical analysis of transcriptional activity in the Arabidopsis genome.”  Yamada K.et.al.   14593172
[4] “A homolog of prokaryotic thiol disulfide transporter CcdA is required for the assembly of the cytochrome b6f complex in Arabidopsis chloroplasts.”  Page M.L.et.al.   15159384
[5] “CcdA is a thylakoid membrane protein required for the transfer of reducing equivalents from stroma to thylakoid lumen in the higher plant chloroplast.”  Motohashi K.et.al.   20214498

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
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FASTA formatted sequence
1:	MNLSVNRCIT GGFVGGFSSC RLNHEKRWVR AGKHCELERE RSLVSDAVSL ERLESKSIKL 
61:	AMLASGLGVA NLVTLSSAKA ADLKMIVLDQ ATSIYILAEG SLGDSVGNFL YSANQQANEA 
121:	VQDQLSALSV TSLAVIFGAG LVTSLSPCTL SVLPLTLGYI GAFGSGKSRG QVIGDTVAFA 
181:	LGLATTLALL GIVASFAGKA YGQIGQGLPV AASGLAIVMG LNLLEIIELQ LPSFFNNFDP 
241:	RAAAANFPSS VQAYLAGLTF ALAASPCSTP VLATLLGYVA TSRDPVIGGS LLLTYTTGYV 
301:	APLIVAASFA GALQSLLSLR KVSAWINPIS GALLLGGGLY TFLDRLFPAA TMVM