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8.A.1.5.1
Open reading frame, Orf2

Accession Number:Q9XDR9
Protein Name:Orf2 protein
Length:197
Molecular Weight:21939.00
Species:Lactobacillus gasseri [1596]
Number of TMSs:1
Location1 / Topology2 / Orientation3: Cell membrane1 / Single-pass membrane protein2
Substrate NONE

Cross database links:

References (1)

[1] “Primary amino acid and DNA sequences of gassericin T, a lactacin F-family bacteriocin produced by Lactobacillus gasseri SBT2055.”  Kawai Y.et.al.   11129595

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
Window Size: Angle:  
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FASTA formatted sequence
1:	MDAKEYESTE FYSYKFKNFS TMIIIPAAIF VLLLFIGSFF AVRQSTVSSV GVVEPTVVIN 
61:	QKNVSYDEGQ VVTKHGQKWV AHVDQDSGIS LMPVMKAKGK VRIVTYVPTN KISSIKKGQK 
121:	LNFSVPTVGG LNSRLTGKVK EIGVYPINVN KQSMYEVISI AKVSDINVKY GMQGNATIVT 
181:	GRSTYFNYFL DKVLNKR