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9.B.40.1.2
The TraY protein

Accession Number:Q9WW95
Protein Name:TraY
Length:745
Molecular Weight:79208.00
Species:Salmonella typhimurium [2492]
Number of TMSs:7
Location1 / Topology2 / Orientation3: Cell membrane1 / Multi-pass membrane protein2
Substrate Unknown

Cross database links:

References (6)

[1] “Surface exclusion gene of IncI1 plasmid R64: nucleotide sequence and analysis of deletion mutants.”  Furuya N.et.al.   7991676
[2] “Determination of the nick site at oriT of IncI1 plasmid R64: global similarity of oriT structures of IncI1 and IncP plasmids.”  Furuya N.et.al.   1917882
[3] “Mutational analysis of the R64 oriT region: requirement for precise location of the NikA-binding sequence.”  Furuya N.et.al.   9393692
[4] “Purification and characterization of thin pili of IncI1 plasmids ColIb-P9 and R64: formation of PilV-specific cell aggregates by type IV pili.”  Yoshida T.et.al.   9603870
[5] “Concerted action of three distinct domains in the DNA cleaving-joining reaction catalyzed by relaxase (TraI) of conjugative plasmid RP4.”  Pansegrau W.et.al.   8300611
[6] “Complete nucleotide sequence of Birmingham IncP alpha plasmids. Compilation and comparative analysis.”  Pansegrau W.et.al.   8014987

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
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FASTA formatted sequence
1:	MSPSPLIKSC VAFAHTQFYS GVTVKILLRA LCAGLAISSL PAMASVTYQD IVSAATNPDD 
61:	LSRQALVTIF GDVVTNPLST SAPTLIGSMF GAFNSIIAVL AVVWFMFIGI RHVVRSGHQG 
121:	QVFSTGRDIV GTLSVVAGFL MIVPTGNGWS IAQLIMLWGA SIMGVGSANV MVQLAADNIA 
181:	NGYSMTVQPV QASTRTAARG IFEMELCKYA VNAGLNDFNQ TAKSSTSLMT ESAKTASGNY 
241:	TVTVSNGSGI CGSASLSVEG NGTTDQSTIG KFFNPFSKNE YSGVISAQRA AMDNMISDMD 
301:	NAASEFVTTF LEKRNSGNGT LPDIETRIQK VADEYERAVQ KSLPTDNGEQ SRKEALKSYL 
361:	TTYGWVTLGA WYQTFATANQ RLAELADRAP AVTSMSSLGE VGDTDLFSAV MSAYRTQLQN 
421:	SSYTPPLGTV VSSSEQRMAN AQDPKSALSE IMGPLVSLTN RIATETSGTG TTSAQINPLI 
481:	KMKNIGDITM VSAEGIWTIY TTARVVVAGG KDSILVKFFN SLTGAASMLT ALFEALAPPV 
541:	YFLLFLMFCA GFSLSIYLPF IPFIFWMTGI GNWIVSVLIG CTAGPLWAAT HLGTSEDRGS 
601:	RAAYGYIYLI DSMIRPPIMV FGFFFASVAI IAVGTILNAL FGAALVNVQF NSLTGIFSLA 
661:	GFLLIYARIC TTTVAAIFAL QAYLPDHVIN FLGGRDGANT LGSMANSVKE IFIGGSRNIR 
721:	HTPGMKTDRL KDNTKGSDDK DGIKG