1.E.34 The Putative Actinobacterial Holin-X (Hol-X) Family

The Hol-X family was retrieved as a distant member of TC family 1.E.20.  The functions of its members are not known. 



This family belongs to the Holin Superfamily III.

Examples:

TC#NameOrganismal TypeExample
1.E.34.1.1

Putative holin

Actinobacteria

Putative holin of Nocardia cyriacigeorgica

 
1.E.34.1.10

Uncharacterized protein of 126 aas and 2 TMSs

Proteobacteria

UP of Novosphingobium pentaromativorans

 
1.E.34.1.2

Putative holin

Actinobacteria

Putative holin of Saccharomonospora viridis

 
1.E.34.1.3

Putative holin (DUF1469 family)

Actinobacteria

Putative holin of Gordonia otitidis

 
1.E.34.1.4

Putative holin

Actinobacteria

Putative holin of Intrasporangium calvum

 
1.E.34.1.5

Uncharacterized protein of 170 aas and 2 TMSs

Actinobacteria

UP of Saccharopolyspora erythraea

 
1.E.34.1.6

Uncharacterized protein of 156 aas and 2 TMSs

Actinobacteria

UP of Stackebrandtia nassauensis

 
1.E.34.1.7

Uncharacterized protein of 133 aas and 2 TMSs

Proteobacteria

UP of Rhodobacter sphaeroides

 
1.E.34.1.8

DUF1469 protein of 307 aas and 2 TMSs.  The DUF1469 domain is residues 30 - 150 where the two TMSs are.

Actinobacteria

DUF1469 domain protein of Micrococcus luteus (Micrococcus lysodeikticus)

 
1.E.34.1.9

Uncharacterized protein of 199 aas and 2 TMSs

Deinococcus/Thermus

UP of Deinococcus maricopensis

 
Examples:

TC#NameOrganismal TypeExample
1.E.34.2.1

YqjE (DUF1469) of 134 aas and 2 TMSs. 

Proteobacteria

YqjE of E coli

 
1.E.34.2.2

Uncharacterized protein of 127 aas and 2 TMSs.

Proteobacteria

UP of Gallionella capsiferriformans (Gallionella ferruginea capsiferriformans)

 
1.E.34.2.3

Uncharacterized protein of 119 aas and 2 TMSs

Proteobacteria

UP of Oxalobacter formigenes

 
1.E.34.2.4

Uncharacterized protein of 131 aas and 2 TMSs

Proteobacteria

UP of Thiomonas intermedia (Thiobacillus intermedius)

 
Examples:

TC#NameOrganismal TypeExample
1.E.34.3.1

Uncharacterized DUF1469 protein of 128 aas and 2 TMSs.

Cyanobacteria

UP of Prochlorococcus marinus

 
Examples:

TC#NameOrganismal TypeExample
1.E.34.4.1

Uncharacterized protein of 125 aas and 2 TMSs

Bacteroidetes

UP of Porphyromonas gingivalis

 
1.E.34.4.2

Uncharacterized protein of 116 aas and 2 TMSs

Bacteroidetes

UP of Prevotella marshii

 
1.E.34.4.3

Uncharacterized protein of 113 aas and 2 TMSs

Bacteroidetes

UP of Belliella baltica