9.B.221.  The 5 TMS YgjV (YgjV) Family 

The YgjV family of unknown function consists of numerous proteins including the E. coli YgjV protein of 5 established TMSs (Drew et al. 2002). It may be distantly related to a viral protein of 290 aas and 7 - 9 TMSs (TC# 9.B.221.3.1).



This family belongs to the .

 

References:

Rodionov, D.A., M.S. Gelfand, and N. Hugouvieux-Cotte-Pattat. (2004). Comparative genomics of the KdgR regulon in Erwinia chrysanthemi 3937 and other γ-proteobacteria. Microbiology 150: 3571-3590.

Examples:

TC#NameOrganismal TypeExample
9.B.221.1.1

The YgjV protein of 183 aas and 5 TMSs. Its gene, ygjV, may be a constituent in the Erwinia chrysanthemi KdgR regulon (Rodionov et al. 2004).

YgjV of E.coli

 
9.B.221.1.10

Uncharacterized protein of 184 aas and 5 - 6 TMSs.

UP of Pseudobutyrivibrio xylanivorans

 
9.B.221.1.11

Uncharacterized protein of 175 aas and 7 putative TMSs.

UP of Micavibrio sp. (marine metagenome)

 
9.B.221.1.12

Uncharacterized protein of 173 aas and 4 - 5 TMSs.

UP of Streptococcus mutans

 
9.B.221.1.2

YgjV homologue of 178 aas and 5 TMSs.

YgjV of Yersinia kristensenii

 
9.B.221.1.3

YgjV homologue of 179 aas and 7 TMSs.

YgjV of Candidatus Wolfebacteria bacterium

 
9.B.221.1.4

Uncharacterized protein of 184 aas and 6 TMSs.

UP of Clostridium sp. CAG:413

 
9.B.221.1.5

Uncharacterized protein of 122 aas and 5 TMSs

UP of Salicola phage SCTP-2

 
9.B.221.1.6

Uncharacterized protein of 189 aas and 6 TMSs in a 2 + 4 TMS arrangement.

UP of Shewanella pealeana

 
9.B.221.1.8

Uncharacterized inner membrane proteinof 200 aas and 5 - 7 TM

UP of Cryobacterium psychrotolerans

 
9.B.221.1.9

Uncharacterized protein of 188 aas and 5 TMSs.

UP of Zetaproteobacteria bacterium (marine metagenome)

 
Examples:

TC#NameOrganismal TypeExample
9.B.221.2.1

Imp-YgjV of 205 aas and 7 TMSs.

Imp-YgjV of Limnohabitans sp. T6-5

 
9.B.221.2.2

Uncharacterized protein of 219 aas and 7 TMSs.  May be related to proteins in 9.B.221.1.

UP of Komagataeibacter europaeus

 
9.B.221.2.3

Uncharacterized protein of 176 aas and 5 or 6 TMSs. This protein also shows extensive sequence similarity with family 9.B.221.1, suggesting that proteins in the YjgV family proteins (TC# 9.B.221.1) are members of the TOG superfamily.

UP of Dongia sp.

 
9.B.221.2.4

Uncharacterized protein of 169 aas and 5 TMSs.

UP of Azospirillum brasilense

 
Examples:

TC#NameOrganismal TypeExample