Biotools>AveHAS


input
Parameters: Hydropathy Window Size (
?Number of residues used to calculate average hydropathy.
):    Angle:
Alignment Format:    Similarity Window Size (
?Number of residues used to calculate average sequence similarity.
):
Input multiple sequence alignment (MSA): Please, paste here your MSA in clustal format:
Types of curves
to plot (
?Hydropathy is always plotted, but you can also select amphypathicity and average similarity.
):		     Amphipathicity curve     Similarity curve
TMS features (
?Specify how HMMTOP-inferred Transmembrane Segments (TMS) should be plotted.
):		     TMS centers   Inferred TMSs   KDE curve  
Output Format (
?Select the image format you want.
):		 PNG  JPG   PDF   EPS   TIFF   SVG
Image Resolution (
?Enter the image resulution you want.
):		 dpi
Plot features: Legend  Grid    X-ticks distance:   Axis label font size:  
Axis tick font size:  
Figure properties: Figure width:   Figure height:   Title:  
X-axis label:   Y-axis label: