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1.A.118.1.3
The Varv peptide A/Kalata-B1

Accession Number:Q5USN7
Protein Name:Varv peptide A/Kalata-B1
Length:207
Molecular Weight:21334.00
Species:Viola odorata (Sweet violet) [97441]
Number of TMSs:1
Substrate

Cross database links:

Pfam: PF03784   

Gene Ontology

GO:0019835 P:cytolysis
GO:0006952 P:defense response
GO:0044179 P:hemolysis in other organism

References (2)

[1] “Conserved structural and sequence elements implicated in the processing of gene-encoded circular proteins.”  Dutton J.L.et.al.   15328347
[2] “A novel suite of cyclotides from Viola odorata: sequence variation and the implications for structure, function and stability.”  Ireland D.C.et.al.   16872274
Structure:
1WN4     

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
Window Size: Angle:  
FASTA formatted sequence
1:	MKMFIVLVLS AAFALPAAFA TEQDVITLQA YEELLKNGAA NGMTKTVISS PVLEEALVSY 
61:	SKNKLGGLPV CGETCVGGTC NTPGCSCSWP VCTRNSLEST KSANPLLEEA LTAFAKKGLG 
121:	GLPVCGETCV GGTCNTPGCT CSWPVCTRNA LETQKPNHLL EEALVAFAKK GNLGGLPVCG 
181:	ETCVGGTCNT PGCSCSWPVC TRNALAM