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1.A.120.1.2
Polyprotein 1a of 4018 aas and ~ 10 TMSs.

Accession Number:AFG19737.1
Protein Name:AFG19737.1 1a [Canine coronavirus]
Length:4019
Molecular Weight:
Species:Canine coronavirus [11153]
Number of TMSs:12
Substrate

Cross database links:

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
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FASTA formatted sequence
1:	MSSKQFKILV NEDYQVNVPS LPIRDVLQEI KYCYRNGFEG YVFVPEYCRD LVDCDRKDHY 
61:	VIGVLGNGIS DLKPVLLTEP SVMLQGFIVR ASCNGVLEDF DLKIARTGRG AIYVDQYMCG 
121:	ADGKPVIEGD FKDYFGDEDV IEFEGEDYHC AWTVVRDEKP LNQQTLFTIQ EIQYNLDIPH 
181:	KLPNCATRHV APPVKKNSKI VLSEDYRKLY DIFGSPFMGN GDCLSKCFDT LHFIAATLRC 
241:	PCGSESSGVG DWTGFKTACC GLSGKVKGVT LGDVKPGDAV VTSMSAGKGV KFFANCVLQH 
301:	AGDVENVSIW KVIKTFTVDE TVCTPDFEGE LNDFIKPESK SPTACSIKRA FITGEIDDAV 
361:	HDCIITGKLD LSTNLFGNVG LLFKKTPWFV QKCGALFVDA WKVVEELCSS LKLTYKQIYE 
421:	VVASLCTSAF TIVNYKPTFV VSDNRVKDLV DKCVKVLVKA FDVFTQTITI AGIEAKCFVL 
481:	GAKYLLFNNA LVKLVSVKIL GKKQKGLESA FFATSLVGAT VNVTPKRTET ANISLNKVDD 
541:	VAAPGEGYIV IVGDMAFYKS GEYYFMMASP DSVLINNVFK AARVPSYNIV YDVDDDTKSK 
601:	MIAKLGSSFE YDGDIDAAIV KVNELLIEFK QQNLCFRALK DDESIFVEAY LKKYKMPACL 
661:	AKHIGLWNII KQDSCKKGFL SLFNHLNELE DVKETNVQAI KDILCPDLLL DLDYGAIWYK 
721:	CMPSCSDLSV LGSVQLLIGN GVKVVCDGCK VFANQLSNGY NKLCNAARTD IEIGGIPFST 
781:	FKTPTNTFIE MTDAIYSVIE QGKALSFGNA DVPVLDNGTI STDDWSEPIL LEPAEYVKPK 
841:	NNGNVIVIAG YTFYKDEDEH FYPYGSGKIV QRMYNKMGGG DKTVSFSEEV DVQEIAPVTR 
901:	VKLEFEFDNE IVTGVLEQAI GTRYKFTGTT WEEFEDSISE ELDAIFDTLA NQGVELEGYF 
961:	IYDTCGGFDI KNPDGIMISQ YDINNIADEK SETGASSEEE EVESVEEDAE NEIEASDCVE 
1021:	ETSSQEDVET VEVEDVTSTE EDVEIVEVSA KDDPWAAAVD VQEAEQIKPS LPPFKTTNLN 
1081:	GKIILKQQDN NCWINACCYQ LQAFDFFNNE AWEKFKKGDV MDFVNLCYAA TTLERGHSGD 
1141:	AEYLLELMLN DYSTAKIVLA ARCGCGEKEI VLERTVFKLS PLRNDFKYGV CGDCMQINNA 
1201:	GVVECLKDLV YLSMIEWKNA RPVSDFIVKP IMHAVYIGST QSGHYMIDDC EHGYCVDGMG 
1261:	IKPCKGKLYT STLFINANVM TRVEKPKQQS KVEKVEQQPE IEEKKPSIEK EEFQSPKNDD 
1321:	LILPFYKAGK LSFYQGDLDV LINFLEPDVI VNAANGDLKH MGGVARAIDV FTGGKLTVRS 
1381:	KDYLKKNKSI APGNAVFFEN VIEHLSVLNA VGPRNGDSRV EAKLNNVYKA IAKCEGKILT 
1441:	PLISVGIFNV KLETSLQCLL KTVNDRELNI FVYTDQERQA VENFFSGSIP VKVTEDNVNH 
1501:	ERVSVSFDKT YGEQLKGTVV IKDKDVTNQL PSAFDVGQKV VKAIDLDWQA HYGFHDAAAF 
1561:	SASSHDAYKF EVVTHSNFIV HKQTDNNCWI NAICLALQRL KPQWKFPGVR GLWNEFLERK 
1621:	TQGFVHMLYH ISGVKKGEPG DAELTLHKLG DLMDNDCEII VTHTTACDKC AKVEKFTGPV 
1681:	VAAPLAIHGT DETCVHGVSV NVKVTQIKGT VAITSLSGPI IGEVLEATGY ICYRGSSKNG 
1741:	HYTYYDNRNG LMIDAEKAYH FNKDLLQVTT AIASNFVVKK PQVEEKPKTR VFNRIEESPK 
1801:	VIVQEQKLLA IESGADYALT EFGRYADMFF MAGDKILRFL LEVFKYLLVL FMCLRSTKMP 
1861:	KVKVKPPHAF KDLGAKVRTL NYMRQLNKPS VWRYAKLVLL LIAIYNFFYL FVSIPVVHKL 
1921:	ACNGAVQAYK NSSFVKSEVC GNSILCKACL ASYDELADFQ HLQVTWDFKS DPLWSRLVQL 
1981:	SYFAFLAVFG NNYVRCVLMY FVSQYLNLWL SYFGYVEHSW FLHVVNFESI SAEFVIIVIV 
2041:	VKAVLVLKHI VFSCSNPSCK TCSKIARQTR IPIQVVVNGS MKTVYVHANG TGKLCKKHNF 
2101:	YCKNCDSYGF ENTFICDEIV RDLSNSVKQT VYATDRSHHE VTKVECSDGF YRFYVGDEFT 
2161:	SYDYDVKHKK YSSQEVLKNM LLLDDFIVYS PSGSSLANVR NACVYFSQLI GKPIKIVNSD 
2221:	LLEDLSVDFK GALFNAKKNV IKNSFNVDVS ECKNLDECYR ACNLDVSFST FEMAVNNAHR 
2281:	FGVLITDRSF NNFWPSKVKP GSAGVSAMDI GKCMTSDAKI VNAKVLTQRG KSVVWLSQDF 
2341:	AALSSTAQKV LVKTFVEEGV NFSLTFNAVG SDDDLPYERF TESVPPKSGS GFFDVIKQLK 
2401:	QIMMLILAFI FIYGLCSVYS VATQSYIESA EGYDYMVIKN GIVQPFDDTI SCVHNTYKGF 
2461:	GDWFKAKYGF IPTFGKSCPI VVGTVFDLEN MRPIPDVPAY VALVGRSLVF AINAAFGVTN 
2521:	MCYDHTGSAV SKDSYFDTCV FNAACTTLTG LGGTIIYCAK QGLVEGAKLY SDLMPDYYYE 
2581:	HASGNMVKLP AIIRGLGLRF VKTQATTYCR VGECIDSKAG FCFGGDNWFV YDNEFGNGYI 
2641:	CGNSVLGFFK NVFRLFNSNM SVVATSGAML VNIIIACLAI AACYGVLKFK KIFGDCTLLI 
2701:	VMIIVTLVVN NVSYFVTQNT FFMIIYAIVY YFTTRKLAYP GILDAGFIIA YINMAPWYVI 
2761:	TAYILVFLYD SLPSLFKLKV STNLFEGDKF VGNFESAAMG TFVIDMRSYE TIVNSTPIER 
2821:	IKSYANSFNK YKYYTGSMGE ADYRMACYAH LGKALMDYSV NRTDMLYTPP TVSVNSTLQS 
2881:	GLRKMAQPSG LVEPCIVRVS YGNNVLNGLW LGDEVICPRH VIASDTTRVI NYENEMSSVR 
2941:	LHNFSVSKNN VFLGVVSAKY KGVNLVLKVN QVNPNTPEHK FKSIKAGESF NILACYEGCP 
3001:	GSVYGVNMRS QGTIKGSFIA GTCGSVGYVL ENGTLYFVYM HHLELGNGSH VGSNLEGEMY 
3061:	GGYEDQPSMQ LEGTNVMSSD NVVAFLYAAL INGERWFVTN TSMSLESYNT WAKTNSFTEL 
3121:	SSTDAFSMLA AKTGQSVEKL LDSIVRLNKG FGGRTILSYG SLCDEFTPTE VIRQMYGVNL 
3181:	QAGKVTSFFY PIMTAMTILF AFWLEFFMYT PFTWINPTFV SIVLAVTTLV STVFVSGIKH 
3241:	KMLFFMSFVL PSVILVTAHN LFWDFSYYES LQSIVENTNT MFLPVDMQGI MLTVFCFIVF 
3301:	VTYSVRFFTC KQSWFSLAVT TVLVIFNMVK IFGTSDEPWT ENQIAFCFVN MLTMIVSLTT 
3361:	KDWMVVVASY RIAYYIVVCV MPSAFVSDFG FMKCISIVYM ACGYLFCCYY GILYWVNRFT 
3421:	CMTCGVYQFT VSAAELKYMT ANNLSAPKNA YDAMILSAKL IGVGGKRNIK ISTVQSKLTE 
3481:	MKCTNVVLLG LLSKMHVESN SKEWNYCVGL HNEINLCDDP EIVLEKLLAL IAFFLSKHNT 
3541:	CDLSELIESY FENTTILQSV ASAYAALPSW IALEKARADL EEAKKNDVSP QILKQLTKAF 
3601:	NIAKSDFERE ASVQKKLDKM AEQAAASMYK EARAVDRKSK IISAMHSLLF GMLKKLDMSS 
3661:	VNTIIDQARN GVLPLSIIPA ASATRLVVVT PSLEVFSRIR QENNVHYAGA IWTIVEVKDA 
3721:	NGSHVHLKEV TAANELNLTW PLSITCERTT KLQNNEIMPG KLKERAVKAS STLDGEAFGS 
3781:	GKALMAAESG KSFMYAFIAS ENNLKYVKWE SNNDIIPIEL EAPLRFYVDG ANGPEVKYLY 
3841:	FVKNLNTLRR GAVLGYIGAT VRLQAGKPTE HPSNSSLLTL CAFAPDPAKA YVDAVKRGMQ 
3901:	PVNNCVKMLS NGAGNGMAIT NGVEANTQQD SYGGASVCIY CRCHVEHPAI DGLCRYKGKF 
3961:	VQIPTGTQDP IRFCIENEVC VVCGCWFNNG CMCDRTSMQS STVDQSYLNE CGVLVQLD