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1.A.120.1.3
ORF1a polyprotein, partial of 4345 aas and ~ 7 TM

Accession Number:QMU93623
Protein Name:QMU93623.1 ORF1a polyprotein, partial [Severe acute respiratory syndrome coronavirus 2]
Length:4346
Molecular Weight:
Species:Severe acute respiratory syndrome coronavirus 2 [2697049]
Number of TMSs:8
Substrate

Cross database links:

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
Window Size: Angle:  
FASTA formatted sequence
1:	LVRGFGDSVE EVLSEARQHL KDGTCGLVEV EKGVLPQLEQ PYVFIKRSDA RTAPHGHVMV 
61:	ELVAELEGIQ YGRSGETLGV LVPHVGEIPV AYRKVLLRKN GNKGAGGHSY GADLKSFDLG 
121:	XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 
181:	XXXXXXXXXX XXXXXXXXXX XXXXXXXXEH EIAWYTERSE KSYELQTPFE IKLAKKFDTF 
241:	NGECPNFVFP LNSIIKTIQP RVEKKKLDGF MGRIRSVYPV ASPNECNQMC LSTLMKCDHC 
301:	GETSWQTGDF VKATCEFCGT ENLXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 
361:	XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXGL 
421:	NDNLLEILQK EKVNINIVGD FKLNEEIAII LASFSASTSA FVETVKGLDY KAFKQIVESC 
481:	GNFKVTKGKA KKGAWNIGEQ KSILSPLYAF ASEAARVVRS IFSRTLETAQ NSVXXXXXXX 
541:	XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 
601:	XXXXXXXXXX XXXXXXXXXX XIVKFISTCA CEIVGGQIVT CAKEIKESVQ TFFKLVNKFL 
661:	ALCADSIIIG GAKLKALNLG ETFVTHSKGL YRKCVKSREE TGLLMPLKAP KEIIFLEGET 
721:	LPTEVLTEEV VLKTGDLQPL EXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 
781:	XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXELGT 
841:	EVNEFACVVA DAVIKTLQPV SELLTPLGID LDEWSMATYY LFDESGEFKL ASHMYCSFYP 
901:	PDEDEEEGDC EEEEFEPSTQ YEYGTEDDYQ GKPLEFGATS AALQPEEEQE EDWLDDDSQQ 
961:	TVGQQDGSED NQTTTIQTIV EVQPQLEMEL TPVVQTIEVN SFSGYLKLTD NVYIKNADIV 
1021:	EEAKKVKPTV VVNAANVYLK HGGGVAGALN KATNNAMQVE SDDYIATNGP LKVGGSCVLS 
1081:	GHNLAKHCLH VVGPNVNKGE DIQLLKSAYE NFNQHEVLLA PLLSAGIFGA DPIHSLRVCV 
1141:	DTVRTNVYLA VFDKNLYDKL VXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 
1201:	XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXSDIDI TFLKKDAPYI 
1261:	VGDVVQEGVL TAVVIPTKKA GGTTEMLAKA LRKVPTDNYI TTYPGQGLNG YTVEEAKTVL 
1321:	KKCKSAFYIL PSIISNEKQE ILGTVSWNLR EMLAHAEETR KXXXXXXXXX XXXXXXXXXX 
1381:	XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXM 
1441:	RSLKVPATVS VSSPDAVTAY NGYLTSSSKT PEEHFIETIS LAGSYKDWSY SGQSTQLGIE 
1501:	FLKRGDKSVY YTSNPTTFHL DGEVITFDNL KTLLSLREVR TIKVFTTVDN XXXXXXXXXX 
1561:	XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 
1621:	XXXXXXXXXX XXXXXXXXXX XXXXXXXXYL ATALLTLQQI ELKFNPPALQ DAYYRARAGE 
1681:	AANFCALILA YCNKTVGELG DVRETMSYLF QHANLDSCKR VLNVVCKTCG QQQTTLKGVE 
1741:	AVMYMGTLSY EQFKKGVQIX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 
1801:	XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XKPVTYKLDG 
1861:	VVCTEIDPKL DNYYKKDNSY FTEQPIDLVP NQPYPNASFD NFKFVCDNIK FADDLNQLTG 
1921:	YKKPASRELK VTFFPDLNGD VVAIDYKHYT PSFKKGAKLL HKPIVWHVXX XXXXXXXXXX 
1981:	XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 
2041:	XXXXXXXXXX XKPANNSLKI TEEVGHTDLM AAYVDNSSLT IKKPNELSRV LGLKTLATHG 
2101:	LAAVNSVPWD TIANYAKPFL NKVVSTTTNI VTRCLNRVCT NYMPYFFTLL LQLCTFTRST 
2161:	NSRIKASXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 
2221:	XXXXXXXXXX XXXXXXXXXY REGYLNSTNV TIATYCTGSI PCSVCLSGLD SLDTYPSLET 
2281:	IQITISSFKW DLTAFGLVAE WFLAYILFTR FFYVLGLAAI MQLFFSYFAV HFISNSWLMW 
2341:	LIINLVQMAX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 
2401:	XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXTFIS DEVARDLSLQ FKRPINPTDQ 
2461:	SSYIVDSVTV KNGSIHLYFD KAGQKTYERH SLSHFVNLDN LRANNTKGSL PINVIVFDGK 
2521:	SKCEESSAKS ASVYYSQLMC QPILLLDQAL VXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 
2581:	XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 
2641:	XXXXNNYMLT YNKVENMTPR DLGACIDCSA RHINAQVAKS HNIALIWNVK DFMSLSEQLR 
2701:	KQIRSAAKKN NLPFKLTCAT TRQVVNVVTT KIALKGGKIV NNWLKQLIKV TLVFLFVAAI 
2761:	FYLIXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 
2821:	XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXFLP RVFSAVGNIC YTPSKLIEYT 
2881:	DFATSACVLA AECTIFKDAS GKPVPYCYDT NVLEGSVAYE SLRPDTRYVL MDGSIIQFPN 
2941:	TYLEGSVRVV TTFDSEYCRH GTCERSEXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 
3001:	XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXFNTLLFL 
3061:	MSFTVLCLTP VYSFLPGVYS VIYLYLTFYL TNDVSFLAHI QWMVMFTPLV PFWITIAYII 
3121:	CISTKHFYWF FSNYLKRRVV FNGVSFSTFE EAALCTFLLN KEMXXXXXXX XXXXXXXXXX 
3181:	XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 
3241:	XXXXXXXXXX XXCMVQVTCG TTTLNGLWLD DVVYCPRHVI CTSEDMLNPN YEDLLIRKSN 
3301:	HNFLVQAGNV QLRVIGHSMQ NCVLKLKVDT ANPKTPKYKF VRIQPGQTFS VLACYNGSPS 
3361:	GVYQXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 
3421:	XXXXXXXXXX XXXXXXXXXX XXXXXXXXXI NGDRWFLNRF TTTLNDFNLV AMKYNYEPLT 
3481:	QDHVDILGPL FAQTGIAVLD MCASLKELLQ NGMNGRTILG SALLEDEFTP FDVVRQCSGV 
3541:	TFQSAVKRTI KGTHHWLLLT ILTSLLVLXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 
3601:	XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 
3661:	XXXVLLILMT ARTVYDDGAR RVWTLMNVLT LVYKVYYGNA LDQAISMWAL IISVTSNYSG 
3721:	VVTTVMFLAR GIVFMCVEYC PIFFITGNTL QCIMLVYCFL GYFCTCYFGL FCLLNXXXXX 
3781:	XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 
3841:	XXXXXXXXXL QQLRVESSSK LWAQCVQLHN DILLAKDTTE AFEKMVSLLS VLLSMQGAVD 
3901:	INKLCEEMLD NRATLQAIAS EFSSLPSYAA FATAQEAYEQ AVANGDSEVV LKKLKKSLNV 
3961:	AKSXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 
4021:	XXXXXXXXXX XXLNIIPLTT AAKLMVVIPD YNTYKNTCDG TTFTYASALW EIQQVVDADS 
4081:	KIVQLSEISM DNSPNLAWPL IVTALRANSA VKLQNNELSP VALRQMSCAA GTTQTACTDD 
4141:	NALAYXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 
4201:	XXXXXXXXXX XXXXXXXXXX XXXXXXXXXN ATEVPANSTV LSFCAFAVDA AKAYKDYLAS 
4261:	GGQPITNCVK MLCTHTGTGQ AITVTPEANM DQESFGGASC CLYCRCHIDH PNPKGFCDLK 
4321:	GKYVQIPTTC ANDPVGFTLK NTVCT