TCID | Name | Domain | Kingdom/Phylum | Protein(s) |
---|---|---|---|---|
1.A.16.1.1 | Formate uptake/efflux permease, FocA. It catalyzes bidirectional transport, has a pentameric aquaporin-like (TC# 1.A.8) structure, and may function by a channel-type mechanism (Falke et al., 2009; Wang et al. 2009). The structure at 2.25 Å resolution has been determined (Wang et al., 2009). The protein is encoded in an operon with pyruvate-formate lyase, PflB. A pyruvate:formate antiport mechanism has been suggested (Moraes and Reithmeier 2012). The C-terminal 6 aas are required for formate transport, but not for homopentamer formation (Hunger et al. 2017). The N-terminus of FocA interacts with PflB, and this interaction is essential for optimal formate translocation (Doberenz et al. 2014). In fact, the GREs, TdcE and PflB, interact with the FNT channel protein, probably to control formate translocation by FocA (Falke et al. 2016). The lipophilic constrictions of FocA mainly act as barriers to isolate the central histidine from the aqueous bulk, preventing protonation via proton wires. Thus, an FNT transport model is supported in which the central histidine is uncharged, and weak acid substrate anion protonation occurs in the vestibule regions of the transporter before passing the constrictions (Schmidt and Beitz 2021). An interplay between the conserved pore residues Thr-91 and His-209 controls formate translocation through the FocA channel (Kammel et al. 2022). T91 is essential for formate permeation in both directions; however, it is particularly important to allow anion efflux. H209 is essential for formate uptake by FocA, strongly suggesting that protonation-deprotonation of this residue plays a role in formate uptake. These observations substantiate the premise that efflux and influx of formate by FocA are mechanistically distinct processes that are controlled by the interplay between T91 and H209 (Kammel et al. 2022). | Bacteria |
Pseudomonadota | FocA of E. coli (P0AC23) |
1.A.16.1.2 | Probable formate transporter 2 (Formate channel 2), FocB (Andrews et al. 1997). | Bacteria |
Pseudomonadota | FocB of Escherichia coli |
1.A.16.1.3 | Formate channel, FocA. Competition of formate by Thr90 from the Ω loop may open the channel (Waight et al., 2010). | Bacteria |
Pseudomonadota | FocA of Vibrio cholerae (F9A868) |
1.A.16.2.1 | Formate-specific channel protein, FdhC of 280 aas (Nölling and Reeve 1997). | Archaea |
Euryarchaeota | FdhC of Methanobacterium thermoformicium |
1.A.16.2.2 | Nitrite uptake porter, NitA (Unkles et al., 1991; 2011) | Eukaryota |
Fungi, Ascomycota | NitA of Aspergillus (Emericella) nidulans |
1.A.16.2.3 | Probable formate uptake permease (Wood et al., 2003). | Archaea |
Euryarchaeota | FdhC of Methanococcus maripaludis |
1.A.16.2.4 | Nitrite uptake porter of 355 aas, Nar1. | Eukaryota |
Viridiplantae, Chlorophyta | Nar1 of Chlamydomonas reinhardtii (Chlamydomonas smithii) |
1.A.16.2.5 | Nitrite channel transporter, NirC, of 382 aas. Structure/function studies including the x-ray structure of the Salmonella orthologue have been reported (Rycovska-Blume et al. 2015). | Archaea |
Thermoproteota | NirC of Thermofilum pendens |
1.A.16.2.6 | Nitrite/Nitrate exporter of 476 aas, Nar1 (Cabrera et al. 2014). | Eukaryota |
Fungi, Ascomycota | Nar1 of Pichia angusta (Yeast) (Hansenula polymorpha) |
1.A.16.2.7 | FNT protein of 313 aas and 6 TMSs that transports L-lactacte (Wiechert et al. 2017). Trophozoites are inhibited by drugs such as MMVOO7839 (Golldack et al. 2017, Hapuarachchi et al. 2017). It seems to transport lactic acid which allows concentrative uptake (Bader and Beitz 2020). However, it exports lactate from inside the parasite to the surrounding parasitophorous vacuole within the erythrocyte cytosol (Lyu et al. 2021). | Eukaryota |
Apicomplexa | PfFNT of Plasmodium falciparum |
1.A.16.2.8 | Formate/nitrite (FNT) transporter of 356 aas and 6 TMSs. | Eukaryota |
Evosea | FNT of Entamoeba histolytica |
1.A.16.2.9 | Lactate/formate/nitrate antiporter, or lactate:H+ symporter, FNT, possibly energized by the pmf. It is similar to 1.A.16.2.7, two proteins that are are 74% identical to each other). 3-D structures have been elucidated (PDB# 7E26 and 7E27). It is essential and druggable In vivo (Davies et al. 2023). | Eukaryota |
Apicomplexa | Lactate/formate:H+ symporter (release from the cytoplasm) of Plasmodium falciparum |
1.A.16.3.1 | Nitrite uptake/efflux channel (Jia et al. 2009). | Bacteria |
Pseudomonadota | NirC of E. coli (P0AC26) |
1.A.16.3.2 | Bacteria |
Bacillota | YwcJ of Bacillus subtilis | |
1.A.16.3.3 | Hydrosulfide (hydrogen sulfide; HS-), Fnt3 (Hsc) channel. Also probably transports chloride, formate and nitrite. The 3-d crystal structure (2.2Å resolution in the closed state) is known (PDB# 3TE2) (Czyzewski and Wang, 2012). The Fnt3 gene is linked to the asrABC operon encoding the sulfite (SO32-) reductase that gives HS- as the product (Czyzewski and Wang 2012). | Bacteria |
Bacillota | Hsc or Fnt3 HS- channel of Clostridium difficile (Q186B7) |
1.A.16.3.4 | Nitrite transporter, NirC, of 268 aas and 6 TMSs (Park et al. 2008). | Bacteria |
Pseudomonadota | NirC of Klebsiella oxytoca |
1.A.16.3.5 | Formate channel of 283 aas and 6 TMSs, Fnt or FdhC. Its function has been veritifed (Helmstetter et al. 2019). | Bacteria |
Bacillota | FdhC of Bacillus thuringiensis |
1.A.16.4.1 | Inner membrane protein, YfdC (310aas; 6 TMSs). May be involved in surfactant resistance (Nakata et al. 2010). | Bacteria |
Pseudomonadota | YfdC of E. coli (P37327) |
1.A.16.4.2 | Putative FNT transporter of 346 aas | Bacteria |
Pseudomonadota | FNT transporter of Psychrobacter arcticus |
1.A.16.4.3 | FNT homologue of 313 aas | Archaea |
Euryarchaeota | FNT homologue of Salinarchaeum sp. Harcht-Bsk1 |
1.A.16.5.1 | FNT homologue of 230 aas | Bacteria |
Mycoplasmatota | FNT homologue of Acholeplasma palmae |
1.A.16.5.2 | FNT homologue of 213 aas | Bacteria |
Mycoplasmatota | FNT homologue of Acholeplasma laidlawii |