TCDB is operated by the Saier Lab Bioinformatics Group
TCIDNameDomainKingdom/PhylumProtein(s)
1.A.22.1.1









Large mechanosensitive ion channel: MscL, with a subunit size of 136 aas with 2 TMSs; it catalyzes efflux of ions (slightly cation selective), osmolytes and small proteins. Residues in the putative primary gate are present in the first TMS (Levin and Blount 2004). Protein-lipid interactions are important for gating, dependent on TMS tilting (Iscla et al., 2011b).  The carboxyl-terminal cytoplasmic helices assemble into a pentameric bundle that resembles cartilage oligomeric matrix protein, and these are required for the selective formation of the pentamer (Ando et al. 2015). Lysophospholipids can increase the size of particles that can be transported (Foo et al. 2015). 500 - 700 channels are needed for 80% survival follwing a large changes in osmotic pressure, a number of channels similar to that found in wild type E. coli cells (Chure et al. 2018). its activation threshold decreases with membrane thickness; the membrane-thickness-dependent MscL opening mainly arises from structural changes in MscL to match the altered membrane thickness by stretching (Katsuta et al. 2018). MscL can provide a route for antibiotic entry into the E. coli cell, and agonists are available to facilitate their entry (Wray et al. 2020; Zhao et al. 2020). MscL has been used to design a synthetic mechanosensitive signaling pathway in compartmentalized artificial cells (Hindley et al. 2019). Available information at the ultrastructural level on lipids tightly bound to transport proteins and the impact of altered bulk membrane lipid composition has been reviewed (Stieger et al. 2021). Competition between hydrophobic mismatch and tension may result in opening tension for MscL (Wiggins and Phillips 2004). The amphipathic N-terminal helix of MscL acts as a crucial structural element during tension-induced gating, both stabilizing the closed state and coupling the channel to the membrane (Bavi et al. 2016).

Bacteria
Pseudomonadota
MscL of E. coli (P0A742)
1.A.22.1.2









Large mechanosensitive ion channel of 151 aas and 2 TMSs. The 3-D structure is known, and it may reflect a nearly closed rather than fully closed state. Modeling support a clockwise rotation of the pore-forming first TMS promotes gating (Bartlett et al. 2004).

Bacteria
Actinomycetota
MscL of Mycobacterium tuberculosis (P0A5K8)
1.A.22.1.3









MscL; catalyzes ion and osmolyte release following osmmotic downshift
Bacteria
Bacillota
MscL (YwpC) of Bacillus subtilis
1.A.22.1.4









MscL (activated by arachidonate (Balleza et al., 2010), 45% identical to MscL of Bacillus subtilis (1.A.22.1.3)).

Bacteria
Pseudomonadota
MscL of Rhizobium etli (Q2KCQ1)
1.A.22.1.5









The pentameric MscL channel (Iscla et al., 2011).  The high resolution structure of a proposed closed but expanded tetrameric intermediate state has been determined (Liu et al. 2009). Adhesive forces to surfaces play an important role, next to other established driving forces, in staphylococcal MscL channel gating (Carniello et al. 2020). Thus, transmembrane antibiotic uptake and solute efflux in infectious staphylococcal biofilms is greatly stimulated when bacteria experience adhesion forces from surfaces as in biofilms.

Bacteria
Bacillota
MscL of Staphylococcus aureus (P68805)
1.A.22.1.6









MscL; rescues cells form osmotic downshift (Bucarey et al., 2012).

Bacteria
Actinomycetota
MscL of Micromonospora aurantica  (D9T6D3)
1.A.22.1.7









Large-conductance mechanosensitive channel, MscL

Bacteria
Cyanobacteriota
MscL of Synechococcus sp.
1.A.22.1.8









Large-conductance mechanosensitive channel, MscL

Bacteria
Bacillota
MscL of Leuconostoc citreum
1.A.22.1.9









Large-conductance mechanosensitive channel, MscL

Bacteria
Actinomycetota
MscL of Renibacterium salmoninarum
1.A.22.1.10









Osmotic adaptation channel that influences sporulation and secondary metabolite production, Sco3190 (MscL) (Wang et al. 2007).

Bacteria
Actinomycetota
Sco3190 of Streptomyces coelicolor
1.A.22.1.11









Large conductance mechanosensitive channel protein, MscL, of 101 aas and 2 TMSs. When the membrane is stretched, MscL responds to the increase of membrane tension and opens a nonselective pore to about 30 A wide, exhibiting a large unitary conductance of approximately 3 nS. The structures of this archaeal MscL, trapped in the closed and expanded intermediate states, has been solved (Li et al. 2015). The comparative analysis of these two new structures reveals significant conformational rearrangements in the different domains of MscL. The large changes observed in the tilt angles of the two transmembrane helices (TMS1 and TMS2) fit well with the helix-pivoting model. Meanwhile, the periplasmic loop region transforms from a folded structure, containing an omega-shaped loop and a short beta-hairpin, to an extended and partly disordered conformation during channel expansion. Moreover, a significant rotating and sliding of the N-terminal helix (N-helix) is coupled to the tilting movements of TMS1 and TMS2. The dynamic relationships between the N-helix and TMS1/TMS2 suggest that the N-helix serves as a membrane-anchored stopper that limits the tilts of TM1 and TM2 in the gating process (Li et al. 2015). Residues I21-T30 in TMS 1 constitute the hydrophobic gate, and the packing of aromatic rings of F23 in each subunit of Ma-MscL is critical to the hydrophobic gate (Zhang et al. 2021). Hydrophilic substitutions of the other functionally important residues, A22 and G26, modulate channel gating by attenuating the hydrophobicity of the F23 constriction.

Archaea
Euryarchaeota
MscL of Methanosarcina acetivorans
1.A.22.1.12









MscL protein of 171 aas and 2 or 3 TMSs.

Eukaryota
Rhodophyta
MscL of Chondrus crispus (Carrageen Irish moss) (Polymorpha crispa)
1.A.22.1.13









Putative large-conductance mechanosensitive channel of 101 aas and 2 TMSs.

Viruses
Bamfordvirae, Nucleocytoviricota
MscL channel of Tetraselmis virus 1
1.A.22.1.14









MscL homologue of 101 aas and 2 TMSs.

Viruses
Bamfordvirae, Nucleocytoviricota
MscL of Cafeteria roenbergensis virus BV-PW1].