TCID | Name | Domain | Kingdom/Phylum | Protein(s) |
---|---|---|---|---|
1.A.46.1.1 | Bestrophin-1 (Best1) anion channel; VMD2 gene product (NO3- > I- > Br- > Cl-; PNO3-/PCl- = 5.8) (Sun et al., 2002). Regulated by ceramide-induced dephosphorylation (Xiao et al., 2009). Best1 mediates fast and slow glutamate release in astrocytes upon GPCR activation (Woo et al. 2012). Progressive posterior chorioretinal changes occur over time in the initial ADVIRC proband, leading to visual loss. The causative mutation is in the transmembrane domain of BEST1 (Chen et al. 2016). Autosomal dominant vitreoretinochoroidopathy (ADVIRC), caused by mutation in BEST-1, is a rare, early-onset retinal dystrophy characterised by distinct bands of circumferential pigmentary degeneration in the peripheral retina accompanied by developmental eye defects. It is an ion channel in the basolateral membrane of retinal pigment epithelial (RPE) cells. In patients, BEST1 is expressed at the basolateral membrane and the apical membrane. PolarProtPred is a program for predicting apical and basolateral localization of transmembrane proteins using putative short linear motifs and deep learning (Dobson et al. 2021). During human eye development, BEST1 is expressed more abundantly in peripheral RPE compared to central RPE and is also expressed in cells of the developing retina. Higher levels of mislocalised BEST1 expression in the periphery, from an early developmental stage, may provide the mechanism that leads to the distinct clinical phenotype observed in ADVIRC patients (Carter et al. 2016). Binding of Ca2+ induces conformational changes in the secondary structure leading to assembly of monomers and changes in molecular and macro-organization (Mladenova et al. 2016). BEST1 gene mutations are associated with at least two different forms of macular dystrophy (Chibani et al. 2019). intermolecular protein-lipid interactions may account for the conformational dynamics of hBest1 and its biological function as a multimeric ion channel (Videv et al. 2021). hBest1 is expressed in the retinal pigment epithelium, and mutations in the BEST1 gene cause ocular degenerative diseases colectivelly referred to as "bestrophinopathies". Videv et al. 2021 reviewed the current understanding of hBest1 surface organization, interactions with membrane lipids in model membranes, and its association with microdomains of cellular membranes. Shifts in phase separation/miscibility by cholesterol leads to changes in the structure and localization of hBest1 in the lipid rafts and its channel functions (Videv et al. 2022). | Eukaryota |
Metazoa, Chordata | Bestrophin-1 of Homo sapiens (O76090) |
1.A.46.1.2 | Bestrophin-2 anion channel, BEST2 or VMD2L1 (PNO3-/PCl- = 2.7) (Sun et al., 2002). It also transports bicarbonate (HCO3-) (Qu and Hartzell 2008). The mouse orthologue is swell-insensitive, but the first 64 aas of Bestrophin 1 of Drosophila melanogaster allowed it to mediate cell swelling in response to hypo-osmotic stress (Stotz and Clapham 2012). BEST2 and BEST4 are expressed in colonic goblet cells (Ito et al. 2013). The structure of bovine BEST2 has been determined, and differences with BEST1 have been noted (Owji et al. 2020). | Eukaryota |
Metazoa, Chordata | Bestrophin-2 of Homo sapiens (AAM76995) |
1.A.46.1.3 | Bestrophin family anion channel, YxaK (Protein R13.3) (Sun et al., 2002) | Eukaryota |
Metazoa, Nematoda | YxaK of Caenorhabditis elegans (Q21973) |
1.A.46.1.4 | Bestrophin 3 vitelliform macular dystrophy 2-like protein 3 (possesses a C-terminal motif blocking its own channel activity (Qu et al., 2006). Ca2+ activates anion flux with SCN->I->Cl-. | Eukaryota |
Metazoa, Chordata | Best3 of Mus musculus (Q6H1V1) |
1.A.46.1.5 | Bestrophin1, isoform B. Identified as the Cl- (swell) channel that allows swelling in hypo-osmotic solutions (Stotz and Clapham 2012). Its N-terminal 64 aas are essential for swell activation. | Eukaryota |
Metazoa, Arthropoda | Bestrophin1 of Drosophila melanogaster (B7Z0U6) |
1.A.46.1.6 | Bestrophin-1 (Best1) of 689 aas and 4 TMSs in a 2 + 2 arrangement. The x-ray structure has been determined at 2.85 Å resolution with permeant anions and Ca2+ bound (Kane Dickson et al. 2014). The channel is formed from a pentameric assembly of subunits. Ca2+ binds to the channel's large cytosolic region. A single ion pore, approximately 95 Å in length, is located along the central axis and contains at least 15 binding sites for anions. A hydrophobic neck within the pore probably forms the gate. Phenylalanine residues within it may coordinate permeating anions via anion-π interactions. Conformational changes observed near the 'Ca2+ clasp' hint at the mechanism of Ca2+-dependent gating (Kane Dickson et al. 2014). | Eukaryota |
Metazoa, Chordata | Best1 of Gallus gallus (chicken) |
1.A.46.1.7 | Bestrophin-4, BEST4, Vmd2L2, of 473 aas and 7 TMSs. BEST2 and BEST4 are expressed in colonic goblet cells (Ito et al. 2013). Both proteins transport a variety of monovalent anions. | Eukaryota |
Metazoa, Chordata | BEST4 of Homo sapiens |
1.A.46.1.8 | Bestrophin-3, BEST3, Vmd2L3 of 668 aas and 7 TMSs. It forms calcium-sensitive chloride channels permeable to monovalent anions including bicarbonate (Tsunenari et al. 2003). It's expression prevents ER-stress-induced cell death in renal peithelial cells (Lee et al. 2012). It is expressed in glial cells of the brain (Wang et al. 2019), and when mutant may cause mandibular prognathism (Kajii et al. 2019). Vitamin C induces expression (Wang et al. 2019). | Eukaryota |
Metazoa, Chordata | BEST3 of Homo sapiens |
1.A.46.2.1 | Plasma membrane Ca2+-activated anion-selective channel, Best1 (AN2251) of 499 aas and 4 TMSs. Transports citrate, propionate, benzoate, and sorbate (Roberts et al., 2011). | Eukaryota |
Fungi, Ascomycota | Best1 of Aspergillus nidulans (Q5BB29) |
1.A.46.2.2 | Fungal Best2 protein, AN6909 (Roberts et al., 2011) (29% identical to Best1 (TC# 1.A.46.2.1)). | Eukaryota |
Fungi, Ascomycota | Best2 of Aspergillus nidulans (Q5AXS1) |
1.A.46.2.3 | Bestrophin homologue | Bacteria |
Cyanobacteriota | Bestrophin homologue of Cyanothece sp. PCC8801 (B7K217) |
1.A.46.2.4 | Bestrophin homologue | Bacteria |
Bacillota | Bestrophin homologue of Bacillus cereus (C2UY63) |
1.A.46.2.5 | Bestrophin homologue | Bacteria |
Bdellovibrionota | Bestrophin homologue of Bdellovibrio bacteriovorus (Q6MLK6) |
1.A.46.2.6 | Bestrophin homologue, YneE | Bacteria |
Pseudomonadota | YneE of E. coli (B2N0W4) |
1.A.46.2.7 | Chloroplast bestrophin homologue of 410 aas and 4 or 5 TMSs, VCCN1. Plants adjust photosynthetic light utilization by controlling electron transport and photoprotective mechanisms, and this involves the proton motive force (PMF) across the thylakoid membrane. VCCN1 is a voltage-dependent Cl- channel which localizes to the thylakoid membrane and fine-tunes the PMF by anion influx into the lumen during illumination, adjusting electron transport and photoprotective mechanisms (Herdean et al. 2016). The activity of AtVCCN1 accelerates the activation of photoprotective mechanisms on sudden shifts to high light. Thus, AtVCCN1 acts as an early component in the rapid adjustment of photosynthesis in variable light intensities. | Eukaryota |
Viridiplantae, Streptophyta | Bestrophin homologue of Arabidopsis thaliana (Q9M2D2) |
1.A.46.2.8 | Functionally characterized bestrophin homologue, KpBEST, YneE or RFP-TM of 305 aas and 3 or 4 TMSs per subunit. KpBest is a pentamer that forms a five-helix transmembrane pore, closed by three rings of conserved hydrophobic residues, and has a cytoplasmic cavern with a restricted exit (Yang et al. 2014). From electrophysiological analysis of structure-inspired mutations in KpBest and hBest1, a sensitive control of ion selectivity was observed in the bestrophins, including reversal of anion/cation selectivity, and dramatic activation by mutations at the cytoplasmic exit. The wild type protein seems to be a cation (Na+) channel but the I66F mutation changed it into an anion (Cl-) channel (Yang et al. 2014). There are two constrictions in the channel, one provides the ion selectivity and the other serves as the gate. | Bacteria |
Pseudomonadota | KpBEST of Klebsiella pneumoniae |
1.A.46.2.9 | Uncharacterized protein of 895 aas and 10 TMSs in a 2 + 2 + 2 + 2 + 2 arrangement. There appear to be two full length repeats, each of 4 TMSs, plus and extra C-terminal two TMSs, all homologous to each other. | Eukaryota |
Viridiplantae, Chlorophyta | UP of Ostreococcus lucimarinus |
1.A.46.2.10 | Bestrophin homologue of 361 aas and 2 - 4 TMSs. | Eukaryota |
Rhodophyta | Best protein of Galdieria sulphuraria (Red alga) |
1.A.46.2.11 | Bestrophin homologue of 446 aas and ~ 4 TMSs. | Eukaryota |
Viridiplantae, Chlorophyta | Best protein of Volvox carteri |
1.A.46.2.12 | Uncharacterized protein of 396 aas with several TMSs, 2 - 4 TMSs near the N-terminus, and 2 - 3 TMSs near the C-terminus. | Eukaryota |
Viridiplantae, Streptophyta | UP of Klebsormidium nitens |