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1.A.6.1.13
Acid-sensing ion channel 5 isoform X1 pf 639 aas and possibly 7 TMSs with 5 TMSs in an N-terminal domain not related to ASICs followed by two TMSs, one N-terminal and one C-terminal, all in the ASIC domain of the protein.

Accession Number:RNA26637
Protein Name:RNA26637.1 acid-sensing ion channel 5 isoform X1 [Brachionus plicatilis]
Length:640
Molecular Weight:
Species:Brachionus plicatilis [10195]
Number of TMSs:6
Substrate

Cross database links:

External Searches:

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  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

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Predict TMSs (Predict number of transmembrane segments)
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FASTA formatted sequence
1:	MCSDKSNAFS VCWLDSVCIA FERTTIIRLV TRTKCDVKSI VLSTLALIKS AFESAWMRAT 
61:	VPSKMQQIKE RIFILKLIVK IFKFSMHFIL KFFVTKIDLF LQNIYPFKNK WIEVKVRKLT 
121:	IVSMFIAFKK FQKNLFYFRV KMHLILKRLV SSSSCSLTAA CMQYRKKMIS STQNSNINLK 
181:	NKLKNWILDS SSHGFPKIFK NEKPILKIIW TLCILLSIGF CCFFVIKSVV NYTKYEVTTL 
241:	VRRKIKLPLE LPALSICHNE MFLTPQGYTF KTELIVSSIY QESSNIDYFS YFARLKSFDY 
301:	NVSDETKKSF GFNLDSYMVS CFFGIQSCET EEFIWYLEHY FGSCYLFNTG KYRNGSRKEF 
361:	SKQTNVGSIY GFRMEFLSKK IDELTDLSES RGIHISLFDP KTRVNPWRGI NVASKYITNI 
421:	NVRKRMIKKI PHPYSDCLED HSKFFSSEIY QATKTQAESY SQYLCFECLS LQFMEFFSNS 
481:	DVSKKCEKDC PLECERIEYD YTVSLTDYPT DLVANGLVEL MKKKNSSKNY SLDYVNVFYD 
541:	SLEYESIEEL EKMDIVDLVS SIGGLLGLFI GISVLSFAEI IEILILIVDE IFLSKSRRIV 
601:	INVQNISGGV IFTRKNFQRG RCQAAVKHFH LINDSHIIF